MidgeBase gene description page [Pn.08592]
Outline
| Gene ID | Pn.08592 |
| Type | Protein coding gene |
| Scaffold | PnScaf8298 |
| Start | 19439 |
| End | 25600 |
| Direction | + |
Sequence
Transcript: 780 (bp)
ATGGCTAACGACAGAGAAGTTCTAAAAGTCGTGTGGGAAGGAAAAATACCTGCAAAGTTCGTAGTGGATTCTGATAACAGCGATAATGATGCATTTTTTCTCATGCTGCCCAGAATTTCATATTTTGCGCTGGCTACAGACAAAGTCAAGAAGCACTTTCAGCGGCATGTAGAGAAGGAGGATGACATCTGGTTCAGCTACATGGACGTGCCATTAAAATTTCATATTCCAATAGGCGTTATTTATGATCTTCTCGTTGGTGACAACTCATTACCGTGGCAGATTAACGTTCATTTCAATAAGTTCCCCGACGACGTACTATTTAAATTTCCAAACAAAGATGTTGTTGAAAGCTTCTTCATGAGCTCCCTGAAAGAGGCTGACTTTCTTAAGCATAAAGGTCAAGTAATCTGTCAACTGCAAAAGAAAGATCACAAACAGCTCTTCCTCGGCTTGCAAAACGATAAATTTGATCAGTTTTGGGCGGTGAACAGAAGGCTGATGGAGACAATTGATCAAGAGAACGGGTTTAAGCACATTCCTTTAAGATGCTACATTGACGATGGATATTCTTATCTGCAAAAACTTATATCACCATCGACGGAAAAAGGACAGAAGAAGACAGTGAAAGACTTGCTCGCAGAGTTTTCAACACCTGTGAAGAGAGCAGTTGGCGCTAAAACTCATGGAATTGAAGTTCCTTTAGAAACAGAGCTCCAATGGCTCAGCGAGACGCTCAGCTATCCTGACAATTTTCTACACTTGTGCTTGATCTACGAA
Protein: 260 (aa)
MANDREVLKVVWEGKIPAKFVVDSDNSDNDAFFLMLPRISYFALATDKVKKHFQRHVEKEDDIWFSYMDVPLKFHIPIGVIYDLLVGDNSLPWQINVHFNKFPDDVLFKFPNKDVVESFFMSSLKEADFLKHKGQVICQLQKKDHKQLFLGLQNDKFDQFWAVNRRLMETIDQENGFKHIPLRCYIDDGYSYLQKLISPSTEKGQKKTVKDLLAEFSTPVKRAVGAKTHGIEVPLETELQWLSETLSYPDNFLHLCLIYE
| Type | Start | End | Length |
| CDS |
19439 |
19673 |
235 |
| CDS |
19808 |
19910 |
103 |
| CDS |
19974 |
20122 |
149 |
| CDS |
20192 |
20265 |
74 |
| CDS |
20332 |
20440 |
109 |
| CDS |
25342 |
25385 |
44 |
| CDS |
25532 |
25597 |
66 |
| intron |
19674 |
19807 |
134 |
| intron |
19911 |
19973 |
63 |
| intron |
20123 |
20191 |
69 |
| intron |
20266 |
20331 |
66 |
| intron |
20441 |
25341 |
4901 |
| intron |
25386 |
25531 |
146 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001661241 |
Autophagy-specific protein, putative [Aedes aegypti] gb|EAT46526.1| Autophagy-specific protein, putative [Aedes aegypti] |
6e-97 |
| InterPro |
IPR007239 |
Autophagy-related protein 5 |
|
| Gene Ontology(BP) |
GO:0006914 |
autophagy |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Pfam |
PF04106.7 |
Autophagy protein Apg5 |
7.4e-58 |
| Pfam |
PF10367.4 |
Vacuolar sorting protein 39 domain 2 |
0.016 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA007878-TA |
| A. gambiae |
AGAP010939 |
| H. sapiens |
ENSP00000358072 |
| H. melpomene |
HMEL009781-PA |
| D. plexippus |
DPOGS213116PA |
| C. quinquefasciatus |
CPIJ015362 |
| H. sapiens |
ENSP00000343313 |
| A. mellifera |
GB16402-PA |
| P. vanderplanki |
Pv.01753 |
| D. melanogaster |
FBgn0029943 |
| H. sapiens |
ENSP00000358066 |
| M. musculus |
ENSMUSG00000038160 |
| A. aegypti |
AAEL002286 |
| S. invicta |
SI2.2.0_15247 |
| N. vitripennis |
NV11624-PA |
| P. humanus |
PHUM491030-PA |
| T. castaneum |
TC000747 |