MidgeBase gene description page [Pn.08582]
Outline
| Gene ID | Pn.08582 |
| Type | Protein coding gene |
| Scaffold | PnScaf8283 |
| Start | 14363 |
| End | 15973 |
| Direction | - |
Sequence
Transcript: 1464 (bp)
ATGGCAGATACTAACGACGATGAGTGGCTTTATGGAGCAGAAGGTGAAGGAGAAGCTCCAGTAGAAGAGGAAGAATCGCAACAAGAAGAAATTGAAGCTGTTTTGCCTCAAAAAAATGCAAATAACATTGATAAAACTTTCGAAACATTTGACGAGCAAAACTTTGAGGAAGCGGGAGATGAGGAGCAGTTAATTGCCGAAGATTCCAAAGACGGAAACGAGGAGAGTAACCAAAATCCAGAGGAAGATGAGGACAGCGACGATGACGATGATGATGATGATGACGATATCAATGTAGTGATTGGTGACATAAAATCTGGTGGTGCATCTGCCTACGTGAAAGGAGCCCCGGATCAGAAGCAAAAGCAACCCGGTAGCAAGTTCAATATCGAAGAGTTTGAGAGCGTCGGAACAATAAACGGCCAGCCTGCATTTGAGTTTTCGACTGAGGGCATCGAGGACAAGCCCTGGCGGAAACCGGGTGCAGATATCACAGACTACTTCAATTACGGCTTCAACGAAGAAACATGGCGAGCGTATTGTGAACGACAAAAGCGAATGCGAATACACGAATCGGGCATTGGCTTGGCCAGTTTGACTGCCGCTCAGAATCCAGGCGGATTTCAGCCTCAGCAGGGACATAACGACTCCATTCGACCGAACATTAACATCGGCTTCAACAAACGACCGGGTGGCCCACGACCACCCCGACCACACGGGACAATTGATGTCATCGGCGCACCTTCTCAAAACCCAATGCGCCCAATGGCGCCTCGCGAAAATGTCATTCAAGTTATGACGGCCGATCGTCGCGAATATTCTCGAACGGTCGTCAATCAAAACCCACAAATGCCAATGCAGTTCAACGTTCCGCCCGAGGACTTCTACAATCACGAGGAGCAAGACGCCTTCAACTACGGCTACGAGCCGACTCAAGACGGCAACCAGTGGGAAGGAAATTCGAATTGGGCGCCGAGCGAAATTAAGGAGCTGACACCGATGAACCAGCCGCCACCAGGCATGAACCAACCTCAAATGCACAACGGTCCTCCGCCCCTAAACAAATGGACGATCGTCGCGACCGTCGAATGGGAGGCGGAGGAGGAAGAGACGGCGGCAGAGATTTCAGGGACGACCGACGACACGAAGACCGAAAGCGAATGCGAGAGCGGTCGAACTCGAGGGAGAGAGACTTGCGAAAATCGGATCGAATGCGAGACGAAAGACCGCGATCCGAACGAGACAGATATCCGCGCGAGAGCAGCAGCAGAGGCGCCCGACGATCGAAGTCACGCGAACGAAACAAGCGCTCAAAGAGTCGCGAGCGAAAACGATCTAAATCGAGAGATCATAAAACTGACGAGCGACGCTCGGACAAGTCGAAAAGGGAGCGCTCCTCGAAGAAAGAAGAATCATAAATTAGAAAGAGAGAAAGAGAGAGAGAGAGACGAAGAGCAGAGGAAA
Protein: 488 (aa)
MADTNDDEWLYGAEGEGEAPVEEEESQQEEIEAVLPQKNANNIDKTFETFDEQNFEEAGDEEQLIAEDSKDGNEESNQNPEEDEDSDDDDDDDDDDINVVIGDIKSGGASAYVKGAPDQKQKQPGSKFNIEEFESVGTINGQPAFEFSTEGIEDKPWRKPGADITDYFNYGFNEETWRAYCERQKRMRIHESGIGLASLTAAQNPGGFQPQQGHNDSIRPNINIGFNKRPGGPRPPRPHGTIDVIGAPSQNPMRPMAPRENVIQVMTADRREYSRTVVNQNPQMPMQFNVPPEDFYNHEEQDAFNYGYEPTQDGNQWEGNSNWAPSEIKELTPMNQPPPGMNQPQMHNGPPPLNKWTIVATVEWEAEEEETAAEISGTTDDTKTESECESGRTRGRETCENRIECETKDRDPNETDIRARAAAEAPDDRSHANETSAQRVASENDLNREIIKLTSDARTSRKGSAPRRKKNHKLEREKERERDEEQRK
| Type | Start | End | Length |
| CDS |
14366 |
14767 |
402 |
| CDS |
14850 |
15684 |
835 |
| CDS |
15747 |
15973 |
227 |
| intron |
14768 |
14849 |
82 |
| intron |
15685 |
15746 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653120 |
hypothetical protein AaeL_AAEL008100 [Aedes aegypti] gb|EAT40140.1| conserved hypothetical protein [Aedes aegypti] gb|ABM68607.1| AAEL008100-PA [Aedes aegypti] |
2e-62 |
| InterPro |
IPR007854 |
Pre-mRNA polyadenylation factor Fip1 |
|
| Pfam |
PF05182.8 |
Fip1 motif |
4.7e-24 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC013053 |
| B. mori |
BGIBMGA003348-TA |
| A. gambiae |
AGAP001514 |
| D. plexippus |
DPOGS208703PA |
| A. aegypti |
AAEL008100 |
| P. humanus |
PHUM220840-PA |
| A. mellifera |
GB18851-PA |
| H. melpomene |
HMEL015242-PA |
| N. vitripennis |
NV12815-PA |
| P. vanderplanki |
Pv.12801 |
| D. melanogaster |
FBgn0037255 |
| C. quinquefasciatus |
CPIJ011587 |
| S. invicta |
SI2.2.0_03887 |