MidgeBase gene description page [Pn.08539]
Outline
| Gene ID | Pn.08539 |
| Type | Protein coding gene |
| Scaffold | PnScaf8192 |
| Start | 7691 |
| End | 31618 |
| Direction | + |
Sequence
Transcript: 2466 (bp)
ATGCTGAATGAAAGGGATAAAAACGCGCAAATTGTCGATGTGATAGCAGTGGAGGGGAAGAGCGCACAGCTTCCATGTCGAGTGAGTTCACCGTTGTCGAATGATGTTTCCATGGTGTTCTTCTTTAAATCAGCACACGGAGGAATACCGCTGTACAGTGTTGATATGCGAGACAAAAGCTCACCGAAACATTGGTCAGCGCCAGAAGTCTTCGGGTCACGTGCCAACTTCTCCATTGACAATAAACCTGAATCGCTAGTAATTAAGGATATCAAACGACATGATCAAGGAGTTTATCGTTGTCGAATAGACTTTCGAATGAGTCAAACGCAAAGCTACACATACAATTTATCAGTTATAATTTTACCTGAGTCGCCTGTTGTGCTTGATAGATGGGGAAGACAACTGAATAGCACGAAAATTGGTCCAGTGCAGGAGGGAGAAGACATTATATTGTCATGTCGCGTAGTCGGAGGACGTCCACAACCGACAGTTCGATGGCTGATAAATGGACTGCCCGTCGACGACCAGTACGAGCACAACTCGGGCGATGTCATCGAGAATCGACTGCTGTGGCCTCAGATCCAGAGGAGCGATCTCAACTCGATATTCACGTGTCAGGCGTCGAACACGAAGCTCGTGGAACCCAAGGAGACCTCCTTTGTGCTCGACATGCACTTGAAACCTTTGACGGTGGAAATACGGAGGCCGCCGATTAGGATGGTCGCCGATCGTCGATACGAGATTGTTTGCGAGAGCTCCGGTTCAAGGCCGAATGCAATCATAACGTGGTACAAGGGGAAGCGACAACTGCGACGAACGAAGGATGAGATTTTAAATAATACCACAAAATCGGAACTAAGCTTTTCACCTACCGTCGAGGATGATGGAAAATTTATGGTGTGCCGAGCGGAGAATCCTGTTGTGAGCGGTCTCTTTCTTGAAGCAACACATAAACTCAGCGTCGTCTATCCGCCGCTTGTGACTCTTCAACTTGGCTCAACTCTTACGAACGATGATATTAAAGAGGGAGATGATGTGTACTTTGAATGTCATGTCGAAGCGAATCCTAAGTTTACAAAGCTCTCATGGCTTCATAACGGCATTCATTTAACGCACAATGCATCGGCTCGTATAATTAGATCCAATCAGAGCCTGGTGCTTCAGAAAGTCACGAGGAATTCATCTGGAAACTACGCTTGCAGTGCTCTCAACTCGGAAGGTGAAACCGTGAGCAATCAACTTCCATTGCGGGTCAAATATGCCCCGGTCTGTGCCACTGACAAAACAGTCCTAATTGGTGCTGCCAAAGATGAAAGTGTGGAAATTATTTGTGATATCAATGCCGATCCTCCGGCAAGAAAATTTCGGTGGAAATTTAATAACTCGGGCGAGGTGTTGTTCCTTGACTCGGAGCGCTACAGCAAGAATGGCACGCGGAGCATTCTCCTCTACACGCCCGTAACCGAGCAGGACTTTGGGACGTTGTCTTGCTGGGCGATAAATGAGATTGGCGAGCAATCTGTTAGTTGCTTATTTCAAGTTGTTCTGGCAGTCACTCCATCACCTGTCACAAACTGCAGCGTTAGTAATTACACGAGAGAAGTGGCCGAGATCCAGTGCACGGCGGGCTTTGATGGCGGTATCCAGCAGCGCTTCGTGCTCGAAATTATATCGAGAAAGACTAAAGCAATCAAATACAACTTCACGAACGCTGATGAGCCATACTTCATGCTGGACGCGCTCGAGTCAATTAGCGCGCGGCTAATTGAAGAGAACGACTCGGCGTTCATTGTTGTTTACGCTGCCAATCAGAAGGGCAGCAGCGTCGGTGTCATCATTCGTGATTTCGAACTCGGTGCTGTTCAAAAATTAGATAGAGTTGATAATTTAATTGTTGCGAGCTCGCAAGACACACTTCCGTACTTCATCGGCATCATTGCGACAATCCTCATCGTGTTCATGTTCATCGCTTTCAAGATCATGTCCGTGTGCTGGGCGCAGGATGCGTCGAAGCGATCTGCGTCCGCCGCCGGCACCGCAGCTGGCAACAGCGCAACACCCTTGTCGATGAGTCATAACGAGCAAAATGGAGCGACAAAATTGACAAATCATTCGAATAATTTACTAATAATTAGCAGCTACAACGGCGGCATGAGCAAGCACAACGGCATCAATAATTGTGGTCAGGCAATCACTACATTCACATCGCCCACGAGCAGTCTCAAGAGCAACAAGCCAGCGCTCGATGACGATACAGATAGAGATCCGGACGTAATTCCGGCGTATCATCAGTACGGCTCATCGATAGCAACTGCAGAGGAGCCATATAGCTATAAATCTTTTCAACAGCAAGACGCATTTCACCTTATAAGCACAACGATGCTTTCGAGGCAAGCGGCGCGATCGATAAACGAGGAAATTAAAGAGCGACTTATGAACACAAAGGTTCCGGAGAGTTGCGTC
Protein: 822 (aa)
MLNERDKNAQIVDVIAVEGKSAQLPCRVSSPLSNDVSMVFFFKSAHGGIPLYSVDMRDKSSPKHWSAPEVFGSRANFSIDNKPESLVIKDIKRHDQGVYRCRIDFRMSQTQSYTYNLSVIILPESPVVLDRWGRQLNSTKIGPVQEGEDIILSCRVVGGRPQPTVRWLINGLPVDDQYEHNSGDVIENRLLWPQIQRSDLNSIFTCQASNTKLVEPKETSFVLDMHLKPLTVEIRRPPIRMVADRRYEIVCESSGSRPNAIITWYKGKRQLRRTKDEILNNTTKSELSFSPTVEDDGKFMVCRAENPVVSGLFLEATHKLSVVYPPLVTLQLGSTLTNDDIKEGDDVYFECHVEANPKFTKLSWLHNGIHLTHNASARIIRSNQSLVLQKVTRNSSGNYACSALNSEGETVSNQLPLRVKYAPVCATDKTVLIGAAKDESVEIICDINADPPARKFRWKFNNSGEVLFLDSERYSKNGTRSILLYTPVTEQDFGTLSCWAINEIGEQSVSCLFQVVLAVTPSPVTNCSVSNYTREVAEIQCTAGFDGGIQQRFVLEIISRKTKAIKYNFTNADEPYFMLDALESISARLIEENDSAFIVVYAANQKGSSVGVIIRDFELGAVQKLDRVDNLIVASSQDTLPYFIGIIATILIVFMFIAFKIMSVCWAQDASKRSASAAGTAAGNSATPLSMSHNEQNGATKLTNHSNNLLIISSYNGGMSKHNGINNCGQAITTFTSPTSSLKSNKPALDDDTDRDPDVIPAYHQYGSSIATAEEPYSYKSFQQQDAFHLISTTMLSRQAARSINEEIKERLMNTKVPESCV
| Type | Start | End | Length |
| CDS |
7691 |
7715 |
25 |
| CDS |
15824 |
15956 |
133 |
| CDS |
16829 |
16937 |
109 |
| CDS |
18233 |
18326 |
94 |
| CDS |
21102 |
21215 |
114 |
| CDS |
22672 |
22875 |
204 |
| CDS |
23370 |
23515 |
146 |
| CDS |
23716 |
23860 |
145 |
| CDS |
25978 |
26108 |
131 |
| CDS |
26983 |
27142 |
160 |
| CDS |
27736 |
27835 |
100 |
| CDS |
27951 |
28062 |
112 |
| CDS |
28191 |
28272 |
82 |
| CDS |
28379 |
28520 |
142 |
| CDS |
28834 |
29018 |
185 |
| CDS |
29086 |
29366 |
281 |
| CDS |
29470 |
29605 |
136 |
| CDS |
29778 |
29836 |
59 |
| CDS |
31508 |
31615 |
108 |
| intron |
7716 |
15823 |
8108 |
| intron |
15957 |
16828 |
872 |
| intron |
16938 |
18232 |
1295 |
| intron |
18327 |
21101 |
2775 |
| intron |
21216 |
22671 |
1456 |
| intron |
22876 |
23369 |
494 |
| intron |
23516 |
23715 |
200 |
| intron |
23861 |
25977 |
2117 |
| intron |
26109 |
26982 |
874 |
| intron |
27143 |
27735 |
593 |
| intron |
27836 |
27950 |
115 |
| intron |
28063 |
28190 |
128 |
| intron |
28273 |
28378 |
106 |
| intron |
28521 |
28833 |
313 |
| intron |
29019 |
29085 |
67 |
| intron |
29367 |
29469 |
103 |
| intron |
29606 |
29777 |
172 |
| intron |
29837 |
31507 |
1671 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001968921 |
GG24233 [Drosophila erecta] gb|EDV57980.1| GG24233 [Drosophila erecta] |
0.0 |
| InterPro |
IPR003598 |
Immunoglobulin subtype 2 |
|
| InterPro |
IPR007110 |
Immunoglobulin-like |
|
| InterPro |
IPR013783 |
Immunoglobulin-like fold |
|
| InterPro |
IPR013162 |
CD80-like, immunoglobulin C2-set |
|
| InterPro |
IPR013106 |
Immunoglobulin V-set |
|
| InterPro |
IPR003599 |
Immunoglobulin subtype |
|
| InterPro |
IPR013098 |
Immunoglobulin I-set |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00047.20 |
Immunoglobulin domain |
1e-20 |
| Pfam |
PF05790.10 |
Immunoglobulin C2-set domain |
7.4e-06 |
| Pfam |
PF08205.7 |
CD80-like C2-set immunoglobulin domain |
2.7e-17 |
| Pfam |
PF07679.11 |
Immunoglobulin I-set domain |
2.1e-37 |
| Pfam |
PF13895.1 |
Immunoglobulin domain |
7.1e-35 |
| Pfam |
PF13927.1 |
Immunoglobulin domain |
3.9e-21 |
| Pfam |
PF07686.12 |
Immunoglobulin V-set domain |
7.1e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.02871 |
| Pn.08424 |
| Pn.10456 |
| Pn.03442 |
| Pn.13851 |
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL004362-PA |
| D. plexippus |
DPOGS214714PA |
| C. quinquefasciatus |
CPIJ004618 |
| N. vitripennis |
NV15722-PA |
| A. aegypti |
AAEL009064 |
| A. gambiae |
AGAP004230 |
| P. vanderplanki |
Pv.12234 |
| A. mellifera |
GB18950-PA |
| D. plexippus |
DPOGS200711PA |
| A. aegypti |
AAEL002414 |
| P. humanus |
PHUM311500-PA |
| N. vitripennis |
NV15105-PA |
| A. mellifera |
GB12933-PA |
| P. vanderplanki |
Pv.11192 |
| D. plexippus |
DPOGS214704PA |
| P. humanus |
PHUM119370-PA |
| A. aegypti |
AAEL008236 |
| A. gambiae |
AGAP002104 |
| A. aegypti |
AAEL010645 |
| A. gambiae |
AGAP008320 |
| A. gambiae |
AGAP001824 |
| A. aegypti |
AAEL001227 |
| D. melanogaster |
FBgn0037736 |
| C. quinquefasciatus |
CPIJ017027 |
| C. quinquefasciatus |
CPIJ017012 |
| T. castaneum |
TC016379 |
| P. vanderplanki |
Pv.10948 |
| P. vanderplanki |
Pv.02121 |
| B. mori |
BGIBMGA004778-TA |
| N. vitripennis |
NV16046-PA |
| S. invicta |
SI2.2.0_13167 |
| H. melpomene |
HMEL011587-PA |
| A. gambiae |
AGAP001410 |
| B. mori |
BGIBMGA004752-TA |
| A. aegypti |
AAEL009943 |
| S. invicta |
SI2.2.0_03558 |
| P. humanus |
PHUM513440-PA |
| B. mori |
BGIBMGA001111-TA |
| C. quinquefasciatus |
CPIJ801393 |
| C. quinquefasciatus |
CPIJ005517 |
| P. vanderplanki |
Pv.01664 |
| S. invicta |
SI2.2.0_11008 |
| C. quinquefasciatus |
CPIJ003910 |
| A. gambiae |
AGAP009683 |
| A. mellifera |
GB16060-PA |
| A. mellifera |
GB18796-PA |
| D. plexippus |
DPOGS214757PA |
| P. humanus |
PHUM313690-PA |
| D. plexippus |
DPOGS200752PA |
| N. vitripennis |
NV18439-PA |
| A. aegypti |
AAEL000398 |
| P. vanderplanki |
Pv.09645 |
| T. castaneum |
TC009570 |
| T. castaneum |
TC009065 |
| P. humanus |
PHUM238090-PA |
| A. mellifera |
GB17838-PA |
| A. gambiae |
AGAP009596 |
| T. castaneum |
TC009058 |
| A. mellifera |
GB19889-PA |
| D. melanogaster |
FBgn0038156 |
| T. castaneum |
TC009768 |
| D. melanogaster |
FBgn0083950 |
| N. vitripennis |
NV12857-PA |
| D. plexippus |
DPOGS216214PA |
| D. melanogaster |
FBgn0086604 |
| D. melanogaster |
FBgn0259213 |
| N. vitripennis |
NV11323-PA |
| H. melpomene |
HMEL013021-PA |