MidgeBase gene description page [Pn.08503]
Outline
| Gene ID | Pn.08503 |
| Type | Protein coding gene |
| Scaffold | PnScaf8152 |
| Start | 4778 |
| End | 5889 |
| Direction | + |
Sequence
Transcript: 249 (bp)
ATGGCTTTAAATAAAACAGCCTTTTCAAAGAGGGCCGAGCAGTTAAAGCGATATGAGGAATCAGAAACAAATCGCGAATCAGTTGTGCCAAAGAATCCAAATGAAAGAAAGGTTAGATTTTCGGCTGGATGTATTTTTCTAGCGGCTTGTGCTGCAGGTGACAAAGATGAAGTGCTTAATATGCTCAATAGTGGTGGAGCTGATATTGATACAGCAAATGTCGACGGTTTAACAGCATTGCATCAAACG
Protein: 83 (aa)
MALNKTAFSKRAEQLKRYEESETNRESVVPKNPNERKVRFSAGCIFLAACAAGDKDEVLNMLNSGGADIDTANVDGLTALHQT
| Type | Start | End | Length |
| CDS |
4778 |
5023 |
246 |
| CDS |
5884 |
5886 |
3 |
| intron |
5024 |
5883 |
860 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001848530 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS28519.1| conserved hypothetical protein [Culex quinquefasciatus] |
2e-25 |
| InterPro |
IPR020683 |
Ankyrin repeat-containing domain |
|
| Pfam |
PF12796.2 |
Ankyrin repeats (3 copies) |
0.029 |
| Pfam |
PF13857.1 |
Ankyrin repeats (many copies) |
0.009 |
| Pfam |
PF08139.7 |
Prokaryotic membrane lipoprotein lipid attachment site |
0.4 |
| Pfam |
PF13637.1 |
Ankyrin repeats (many copies) |
0.0057 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA002007-TA |
| C. quinquefasciatus |
CPIJ006925 |
| S. invicta |
SI2.2.0_08980 |