MidgeBase gene description page [Pn.08489]
Outline
| Gene ID | Pn.08489 |
| Type | Protein coding gene |
| Scaffold | PnScaf8133 |
| Start | 22596 |
| End | 23577 |
| Direction | + |
Sequence
Transcript: 870 (bp)
ATGTCAGACAAAAGTGATCCGAAGCAAAGCGCCAAAGACGAGGAGCTGGACGAGCTGCTCGACAGTGCACTCGAGGACTTCGAGAAGGTGGCGCTGAAGGATGGCGCCAAGGGTTCAACATCGAAAGCGCCGTCGGGCGGCGCCGATGAGGTCGAGGACCCGCCAATGGAGACCCTCTGGAACGACCAGTTCATCGCGGAGCAGGCGAAGATGTTCGAGAAACAAATGGCCGACATTTTCGGGGCGACCGACAAGGAGGTCACGCCGGAGCAGCTGCAGCTGGGCTTCCAGCGGATCGCGGAGGCGGCCGCACTCGCCGTCGACCCCAACACCGCCGCCGCTCAAACGCCCGACGTCGACCCCGCCTTCACGCAGAGCATCAAGGACGTGCTGAAGGGGCTGAGCGAGGGCCAGCAGAACCTGCAGCAGCCCTTCTCGGCGGACGACATCGCCGGCATGTTCGGCAACGTCAACCTCAACGAGTCGGGCGAGAGCAATGCTTTTCTGCCGTTCATGCAGGGCATGATGCAGAGCCTGCTCTCGGCCGAGGTGCTGCTGCCGAGCCTCAAGGAGCTCTCGTCCAAATATCCGGCGTGGCTGACCGAGAACGGCCCGAAAATCAGCGCCGAGGAGAAGGAGCGCTACGAGAGCCAGTACCGGCTTATGAAGGAGGTGTGCGACGAGCTCGAGAAGGAAAAGGCAGAAGACAGTGCCGACGTGAAAAAGGAGCGCTTCAACATCGTCCTCGACCGCATGCAGAAGATGCAGGAGCTCGGGCAGCCGCCCGCCGAAATTCTCGGCGACGTCGGTGAGAACGCCGTTCCGCTGGCCGCCGATGGGCCCCTCAACCAGGAGCAGTGTTCGTTAATG
Protein: 290 (aa)
MSDKSDPKQSAKDEELDELLDSALEDFEKVALKDGAKGSTSKAPSGGADEVEDPPMETLWNDQFIAEQAKMFEKQMADIFGATDKEVTPEQLQLGFQRIAEAAALAVDPNTAAAQTPDVDPAFTQSIKDVLKGLSEGQQNLQQPFSADDIAGMFGNVNLNESGESNAFLPFMQGMMQSLLSAEVLLPSLKELSSKYPAWLTENGPKISAEEKERYESQYRLMKEVCDELEKEKAEDSADVKKERFNIVLDRMQKMQELGQPPAEILGDVGENAVPLAADGPLNQEQCSLM
| Type | Start | End | Length |
| CDS |
22596 |
22659 |
64 |
| CDS |
22769 |
23574 |
806 |
| intron |
22660 |
22768 |
109 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650131 |
house keepingprotein, putative [Aedes aegypti] gb|ABF18502.1| peroxisomal biogenesis factor 19 [Aedes aegypti] gb|EAT43591.1| house keepingprotein, putative [Aedes aegypti] |
2e-84 |
| InterPro |
IPR006708 |
Pex19 protein |
|
| Gene Ontology(CC) |
GO:0005777 |
peroxisome |
|
| Pfam |
PF03037.11 |
Kinetoplastid membrane protein 11 |
0.074 |
| Pfam |
PF03755.8 |
YicC-like family, N-terminal region |
0.23 |
| Pfam |
PF09011.5 |
Domain of unknown function (DUF1898) |
0.37 |
| Pfam |
PF04614.7 |
Pex19 protein family |
2e-53 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.09873 |
| M. musculus |
ENSMUSG00000003464 |
| D. melanogaster |
FBgn0032407 |
| S. invicta |
SI2.2.0_08080 |
| H. melpomene |
HMEL013890-PA |
| A. aegypti |
AAEL004985 |
| P. humanus |
PHUM569130-PA |
| B. mori |
BGIBMGA011144-TA |
| T. castaneum |
TC015168 |
| H. sapiens |
ENSP00000357051 |
| D. plexippus |
DPOGS210774PA |
| H. sapiens |
ENSP00000396784 |
| A. mellifera |
GB18587-PA |
| A. gambiae |
AGAP008804 |
| C. quinquefasciatus |
CPIJ009284 |
| N. vitripennis |
NV10147-PA |