MidgeBase gene description page [Pn.08466]
Outline
| Gene ID | Pn.08466 |
| Type | Protein coding gene |
| Scaffold | PnScaf8110 |
| Start | 420 |
| End | 1903 |
| Direction | + |
Sequence
Transcript: 1272 (bp)
ATGCTTCGTCAAATTATGAAGACATTTGTCAATAAAGGCAGCATCAATTTGAGAAAATCGCTGCTGATCCGCCACCTCAGTCTTATCAACGCCAGTGCAAATTTCAAGAACGAAACGATCGAGTTGCACGTACAGAAAGACGAGAGTTCAAAGGCAGCAAAACACGAGTTTCCCTTCGTTTGGCTCCGCGACAATTGCAAGTGTAGCGAGTGCTTTCACAAGACGTCATCGAGTCGAATTATCAATTGGGAGGCGTTCGATGTCGCTGTTAAGCCGAAAAGCGTCGAGTACGACAATGAGAGGAAATTGCTGAAAATTATTTGGAATGATAACGACGAGCACGAGTCGGAGTTCGCGTACGATTGGCTGGAGGCGCGAAATTTTAGCAATCGCGGCGATCACTTGAGGAAGTTCTACAGCCTGCCGAAGAAGCTGTGGAGCAAAAACGAGTTTCGCAGCGCGATGGAGTACTTTGACTTTGAGCAAATTCTCAGCAGCGACCTCGAACTGTACAAGTGGTTGAGGAGTTTTGCAATCAACGGAGTGGCGACCATCACGGGAGTGCCGGAGACCGAGGGCGAGGCTCGTAAAATCGCCGACCGCGTCGGCTTCATAAGGAAGACTCACTACGGCGAGGAGTTTATGGTGAAGGCCAAGGACGGCACCTCGAATGTCGCCTACCTCTCAGCCAATCTTCAGATGCACACCGACCTGCCCTACTATGAATACGTTCCCGGCGTCAACCTCCTCCACTGCCTGGTGCAGTCGAAGTCAAACGGTGCTCAGAATCTCCTCGTCGATGGCTTCTATATCGCCGAGAAATTGAGGCGAGAACATCCGAAGGAGTTCGAGATGCTGACAAAAGTCGTGGTCAATTGGTCGGACGTGGGAGAGGAGGACGCAAATCCGTTTCACTCGATTTATCGTGCGCCGATGATCTGTACCGACTACGATGGAAATCTGACCAGAATCAACCACAGCATTCCGCAGCGCGACTCCTTCTTCTCGGTGCCTCTCGAGCAAGTCAAAGACTGGTACAAGGCGCTTGATTTATTCGTCAAAACCATCCATGAGGAGGCCGTTGAACTGAAAACAGCCGAAGGGACAATTTTGTGCTTCGACAACCGAAGAGCGATTCACGGAAGAAAAACATACGAGGACACCGAAGGCAATTGCAGGCACATTGTTGGCGCCTATCTTGACTGGGACGAAATTTATTCGCGTCTGCGGGTGCTTCAAAAGAAATTTGATAGAGATCTAAAGTATGTGGTT
Protein: 424 (aa)
MLRQIMKTFVNKGSINLRKSLLIRHLSLINASANFKNETIELHVQKDESSKAAKHEFPFVWLRDNCKCSECFHKTSSSRIINWEAFDVAVKPKSVEYDNERKLLKIIWNDNDEHESEFAYDWLEARNFSNRGDHLRKFYSLPKKLWSKNEFRSAMEYFDFEQILSSDLELYKWLRSFAINGVATITGVPETEGEARKIADRVGFIRKTHYGEEFMVKAKDGTSNVAYLSANLQMHTDLPYYEYVPGVNLLHCLVQSKSNGAQNLLVDGFYIAEKLRREHPKEFEMLTKVVVNWSDVGEEDANPFHSIYRAPMICTDYDGNLTRINHSIPQRDSFFSVPLEQVKDWYKALDLFVKTIHEEAVELKTAEGTILCFDNRRAIHGRKTYEDTEGNCRHIVGAYLDWDEIYSRLRVLQKKFDRDLKYVV
| Type | Start | End | Length |
| CDS |
420 |
620 |
201 |
| CDS |
686 |
772 |
87 |
| CDS |
850 |
1663 |
814 |
| CDS |
1731 |
1900 |
170 |
| intron |
621 |
685 |
65 |
| intron |
773 |
849 |
77 |
| intron |
1664 |
1730 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653834 |
epsilon-trimethyllysine 2-oxoglutarate dioxygenase [Aedes aegypti] gb|EAT47152.1| epsilon-trimethyllysine 2-oxoglutarate dioxygenase [Aedes aegypti] |
1e-127 |
| InterPro |
IPR003819 |
Taurine catabolism dioxygenase TauD/TfdA |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF02668.11 |
Taurine catabolism dioxygenase TauD, TfdA family |
2.1e-36 |
| Pfam |
PF06155.7 |
Protein of unknown function (DUF971) |
4.6e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ017091 |
| H. sapiens |
ENSP00000434918 |
| D. plexippus |
DPOGS202962PA |
| P. vanderplanki |
Pv.06632 |
| H. sapiens |
ENSP00000433772 |
| M. musculus |
ENSMUSG00000041660 |
| D. melanogaster |
FBgn0033830 |
| A. gambiae |
AGAP012477 |
| H. sapiens |
ENSP00000263182 |
| A. gambiae |
AGAP008246 |
| B. mori |
BGIBMGA005751-TA |
| H. sapiens |
ENSP00000435781 |
| P. humanus |
PHUM477100-PA |
| D. melanogaster |
FBgn0030575 |
| A. aegypti |
AAEL001707 |