MidgeBase gene description page [Pn.08459]
Outline
| Gene ID | Pn.08459 |
| Type | Protein coding gene |
| Scaffold | PnScaf8105 |
| Start | 27256 |
| End | 28514 |
| Direction | + |
Sequence
Transcript: 1101 (bp)
ATGTCAATCAGCCCATTCGTGTACTGGGCGCAGACCGAAGACCAAATCTCACTCAAAATCGACCTTAAAGACGTAAAAGATTTCAAGGTGAGGAGTGATGATTCGAAATTCAGTTTCACGGCAACGGGTGTGGGCGCGCGTGGACTGCAAGAGTACAGATTCTCGCTGGACCTCTTCCACGAAGTGGACTACGAGCGAATAAAGTCGCTCAAGACGGACAACAAGGTCGATGTTTTCATTCCCAAAAAAGAGAAAGGCTTCTGGAGTCGATTGATTTGCCAGCAGCAGAAGCCGTCGTGGCTGAAAATAGACTTTGACCGATGGAAGTCGGAGGACATGGACGACGAGGATGACGAGAAGCCGCGCAACATCATGAGCGACTACCCGGACATGTACGACCGGTTGCAGAAGGAGGAATTGGGCTTTCGACGCGAGAACTTCAAGAAAGTCTATCTTATCCTCTACAACCTCTTCCAGTTCGTGGGATTCACCTACATTTTGGTCGTCATGGGCATCCGCTATTCGCGCGACGGCGTCAACTCGATGGCCGGCACCTACGAGGCCGTCGGCAACGCCTTCAAGTTCGTTCAGCTGCTGCAGTATTTGGAGGTCATGCACCCGATTTTCGGCTACACAAAGGGTGGCGCTCTCGTGCCCTTCCTGCAGGTCACCGGCCGGAACTTCATTCTCTTCATAATGCTGGAATACGAGCCGCGGATGCTCACAAAGCCGGTCGTCTTCTATTTGTTTCTGGCGTGGGCCTCGATCGAGATCGTCCGCTATCCCTACTACCTGACGCAGCTCTTCAAGTTCGAGATCGACTTGCTCACGTGGATGCGCTACTCGCTGTGGATTCCGCTCTACCCGCTCGGCGTCCTCTGCGAGGGAATCATCATCCTGAGGAACATCCCGTACTTTGACGAAACCAAGCGCCTCTCGCTGCCGCTGCCCAACAAGTGGAACTTTGCTTTCGACATGCCCACCTTCCTCTATCTCTATCTCACGTTCCTCATCCTGCCCGGCATCATCTTCATCATGACGCACATGCAGAAGGTTCGCGCGAAGAAACTCGGCGGCGGATCGAAGCGGTCGAAAGGCGAC
Protein: 367 (aa)
MSISPFVYWAQTEDQISLKIDLKDVKDFKVRSDDSKFSFTATGVGARGLQEYRFSLDLFHEVDYERIKSLKTDNKVDVFIPKKEKGFWSRLICQQQKPSWLKIDFDRWKSEDMDDEDDEKPRNIMSDYPDMYDRLQKEELGFRRENFKKVYLILYNLFQFVGFTYILVVMGIRYSRDGVNSMAGTYEAVGNAFKFVQLLQYLEVMHPIFGYTKGGALVPFLQVTGRNFILFIMLEYEPRMLTKPVVFYLFLAWASIEIVRYPYYLTQLFKFEIDLLTWMRYSLWIPLYPLGVLCEGIIILRNIPYFDETKRLSLPLPNKWNFAFDMPTFLYLYLTFLILPGIIFIMTHMQKVRAKKLGGGSKRSKGD
| Type | Start | End | Length |
| CDS |
27256 |
27333 |
78 |
| CDS |
27421 |
27615 |
195 |
| CDS |
27684 |
28511 |
828 |
| intron |
27334 |
27420 |
87 |
| intron |
27616 |
27683 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003400990 |
PREDICTED: 3-hydroxyacyl-CoA dehydratase-like [Bombus terrestris] |
1e-128 |
| InterPro |
IPR007052 |
CS-like domain |
|
| InterPro |
IPR007482 |
Protein-tyrosine phosphatase-like, PTPLA |
|
| InterPro |
IPR008978 |
HSP20-like chaperone |
|
| InterPro |
IPR017447 |
CS domain |
|
| Pfam |
PF04969.11 |
CS domain |
3.4e-09 |
| Pfam |
PF04387.9 |
Protein tyrosine phosphatase-like protein, PTPLA |
1.9e-49 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000033629 |
| B. mori |
BGIBMGA001396-TA |
| H. sapiens |
ENSP00000456568 |
| H. sapiens |
ENSP00000455587 |
| D. melanogaster |
FBgn0032524 |
| A. mellifera |
GB10416-PA |
| H. sapiens |
ENSP00000455686 |
| D. plexippus |
DPOGS205389PA |
| H. sapiens |
ENSP00000261875 |
| H. sapiens |
ENSP00000455530 |
| T. castaneum |
TC015260 |
| P. humanus |
PHUM307650-PA |
| H. sapiens |
ENSP00000454873 |
| N. vitripennis |
NV17585-PA |
| H. sapiens |
ENSP00000392491 |
| P. vanderplanki |
Pv.07884 |
| H. sapiens |
ENSP00000456300 |