MidgeBase gene description page [Pn.08434]
Outline
| Gene ID | Pn.08434 |
| Type | Protein coding gene |
| Scaffold | PnScaf8095 |
| Start | 26962 |
| End | 32099 |
| Direction | + |
Sequence
Transcript: 3933 (bp)
ATGGAAGATATCGAGTCACAAATAAAGGACATTCAGGAGAAGAAACGACAGGCTCAGGCTCAGGACGAGCGTCAGAAAGGAATCGGACTGCTAGAGAGTGGATACTTTGACTCTGAAATTTATGAGGGAGGTCAGAAAGGAAAGTATGAGGGCTACGTTACCTCAATTGCGACAAATGAAGAAGATGAGGATGACGACGATGAACCAATTAGACCAGACAAAAAGTCATCCGCATTTAATGCTCCTATGCAGTTTATCAAAGAAATCACAAGAAATGAGCCGGAATATGACCCGTTTGAAGATCGACGTCAAAAGACCGTGGGCGAGAAGGAGGATGAATACCGACAGCGTCGTAGAAAATTAGTTATTTCGCCTGAGCGAGTCGATCCATTTGCCGATGGCGGCAAAACTCCCGATGTCAAGTCACGAACATTCACGGAAATTATGCGAGAGCAGCAGCTGCGAGGAGAAGAAGCAGAATTGCGCAAGAAGATTCAGGACAAGGCGAAGGACGGGACGCTTAAAGTTTCCAATGGCGACTCTAACAGAGCGGAAGCTAAGAAGCGAGGGAGATGGGATCAAACAGTGGACGAGCAGTTTGTCCCAGCTAAAAAATCTGCATCCGGTGCACTCACGCCCACTTGGGAAGTCGATAAAACACCGGGAGACCATCGATGGGACGAAACACCAGGAAGAGCGATTGGAAGTGAAACACCAGGCGCCACACCGGCTGCACGACACATTTGGGACGCGACTCCAGCCGTCTCTTCGCATTCGACTACACCAGGTCGCGACACGCCAGCACAGGACAAGTCAGTTCGTAAAAATCGCTGGGATGAGACGCCAAAAACTGAGCGAGAAACGCCCGGTCACAATTCCGGCTGGATGGAGACGCCACGAGCAGATCGCGGAGCTCCGGACCTCATCGATTCCACGCCGGGGGCATCGAAGCGTCGTTCGCGTTGGGACGAAACGCCGTCGGGTGCGACGCCATCGGCCATGACTCCTTCGAGCGCGATGACTCCAAGCATGACGCCACACGCAACTCCGGGACATGCCACGCCGATGCTCACTCCAAGTGGGACAACACCGATCGGCTCAAAGGCCATGGCGATGGCTACACCGACACCAGGACATCTGGCTTCGATGACTCCCGAACAACTGCAAGCCTACCGCTGGGAAAAGGAAATTGACGAGCGCAATCGACCGTTTACTGATGAGGAGTTGGACGCCTTGTTCCCGCCGGGCTACAAAATTTTGCCTGCACCTGCTGGTTATATTCCCATTCGCACGCCAGCCAGAAAACTGACAGCCACACCGACTCCGATCGCGGGGACACCAACGGGATTTTTCATTCAACAAGAGGACAAAACAGCTGCGAAATTCAATGACAACCAGCCGAAAGGAAATTTGCCTTTCATGAAGCCCGAGGACGCACAATATTTCGACAAACTTCTCGTCGACGTCGACGAGGAGGCGCTGACTCCCGAGGAGCAGCGCGAAAGAAAAATCATGAAGCTGCTGCTGAAAATCAAGAACGGAACGCCGCCGATGAGAAAAGCCGCACTTCGTCAAATCACCGACAAGGCACGAGAGTTCGGTGCCGGTCCGTTGTTTAATCAGATTCTGCCGCTTCTGATGTCGCCGACTCTCGAGGACCAGGAACGTCACTTGCTCGTCAAAGTCATCGATCGAATTCTCTACAAACTCGACGACCTCGTTCGTCCCTACGTTCACAAGATTCTGGTCGTTATCGAGCCGCTGCTGATTGACGAAGACTACTATGCTCGCGTCGAGGGACGAGAGATCATCTCGAACTTGGCAAAGGCAGCCGGTTTGGCGACAATGATCAGTACCATGCGTCCGGATATTGACAACATCGATGAATATGTGCGAAACACGACGGCAAGAGCGTTCGCCGTTGTGGCGTCGTCGCTCGGAATCCCGTCGCTTTTGCCGTTCTTAAAGGCCGTTTGCAAGAGCAAGAAATCGTGGCAGGCTCGTCACACGGGCATCAAGATCGTTCAGCAAATCGCCATCCTCATGGGCTGTGCTATTCTTCCGCATCTGAAGTCACTCGTCGAGATCATCGAGCACGGCTTAGTGGACGAGCAACAGAAGGTCCGAACCATCACGGCTCTCGCTTTGGCCGCGTTGGCAGAAGCGTCAACGCCGTACGGCATCGAGAGCTTCGACTCTGTCCTCAAGCCGCTGTGGAAAGGCATCCGAACGCACCGTGGAAAAGGCTTAGCTGCATTTCTAAAAGCTATCGGCTATTTGATTCCGCTCATGGACGCCGAATATGCCAACTACTATACGCGCGAAGTAATGCTGATTTTAATCCGCGAGTTTCAATCGCCCGACGAAGAAATGAAGAAGATTGTACTGAAAGTCGTGAAGCAATGTTGTGCAACCGACGGCGTTGAAGCTCAATACATAAAAGAGGAAATTTTGCCGCATTTCTTCAAGCACTTTTGGAATCATCGCATGGCATTGGATCGCCGTAATTATCGTCAATTGGTCGATACAACGGTAGAAATTGCTAACAAAGTCGGCTCATCCGAGATCATTAATCGTGTCGTTGACGACTTGAAAGATGAAAACGAACAATACCGAAAGATGGTTATGGAATCGGTGGAGAAGATTATGGGCAATCTCGGCGCGGCGGACATCGACTCGCGCTTGGAGGAGCAGCTTATCGACGGTATTCTGTATGCGTTCCAGGAGCAGACCACCGAGGACGTGGTAATGCTCAATGGCTTCGGAACGATTGTGAATCAGCTGAGCAAGCGAGTGAAGCCGTATTTGCCGCAGATTTGCGGAACAATTCTGTGGCGCTTGAACAACAAGTCGGCTAAAGTAAGACAGCAGGCAGCGGATTTGATTTCGCGCATTGCCGTCGTGATGAAGACGTGTCAGGAGGAGAAGCTGATGGGGCATTTGGGCGTCGTTTTGTACGAGTATCTCGGCGAGGAGTATCCCGAAGTGCTCGGTTCGATTTTGGGCGCACTGAAGGCGATTGTGAATGTCATTGGCATGACGAAAATGACGCCGCCCATCAAGGACTTGTTGCCGCGTTTGACGCCGATCCTGAAGAATCGACACGAGAAAGTACAAGAGAATTGTATTGATCTGGTCGGTCGAATTGCCGATCGCGGTCCCGAGTACGTATCGGCCCGCGAATGGATGCGCATTTGCTTTGAGCTGCTCGAGCTGCTGAAGGCCCACAAGAAGGCGATTCGTCGTGCGACGGTAAACACTTTCGGCTACATTGCGAAAGCCATTGGACCGCACGATGTGCTGGCGACTCTTCTCAACAACCTCAAGGTGCAGGAGCGACAAAACCGTGTGTGCACAACAGTTGCGATCGCCATCGTGGCAGAAACTTGCCGACCTTTCACCGTCCTCCCGGCACTAATGAACGAGTATCGAGTTCCCGAGCTGAACGTCCAGAACGGCGTGCTCAAGTCGCTTTCATTCCTCTTCGAGTACATCGGAGAGATGGGCAAAGATTACATCTATGCGGTCGTTCCTCTGCTCGAAGACGCCCTCATGGACCGCGACTTGGTGCACAGACAAACTGCTTGCGCCGCAATCAAGCACATGTCGCTCGGCGTCTACGGCTTTGGATGCGAGGATGCGCTCGTTCATCTGCTGAACTACGTGTGGCCAAACATTTTCGAAACATCACCTCATCTCGTGCAAGCATTCATGGACGCCGTCGAGGGACTTCGAGTGGCGCTCGGACCAATCAAGATTCTGCAATACACGCTGCAAGGACTGTTTCATCCGGCGCGAAAGGTTCGCGACGTTTACTGGAAGATTTACAATTCGCTCTACATAGGAGCCCAAGATGCACTAATTGCCGGCTACCCGCGAATTGAAAATGACCCTAAAAATGAGTACATTCGTTACGAGCTCGACTATAACTTG
Protein: 1311 (aa)
MEDIESQIKDIQEKKRQAQAQDERQKGIGLLESGYFDSEIYEGGQKGKYEGYVTSIATNEEDEDDDDEPIRPDKKSSAFNAPMQFIKEITRNEPEYDPFEDRRQKTVGEKEDEYRQRRRKLVISPERVDPFADGGKTPDVKSRTFTEIMREQQLRGEEAELRKKIQDKAKDGTLKVSNGDSNRAEAKKRGRWDQTVDEQFVPAKKSASGALTPTWEVDKTPGDHRWDETPGRAIGSETPGATPAARHIWDATPAVSSHSTTPGRDTPAQDKSVRKNRWDETPKTERETPGHNSGWMETPRADRGAPDLIDSTPGASKRRSRWDETPSGATPSAMTPSSAMTPSMTPHATPGHATPMLTPSGTTPIGSKAMAMATPTPGHLASMTPEQLQAYRWEKEIDERNRPFTDEELDALFPPGYKILPAPAGYIPIRTPARKLTATPTPIAGTPTGFFIQQEDKTAAKFNDNQPKGNLPFMKPEDAQYFDKLLVDVDEEALTPEEQRERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASSLGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLKSLVEIIEHGLVDEQQKVRTITALALAALAEASTPYGIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKEEILPHFFKHFWNHRMALDRRNYRQLVDTTVEIANKVGSSEIINRVVDDLKDENEQYRKMVMESVEKIMGNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLSKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCRPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVVPLLEDALMDRDLVHRQTACAAIKHMSLGVYGFGCEDALVHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPIKILQYTLQGLFHPARKVRDVYWKIYNSLYIGAQDALIAGYPRIENDPKNEYIRYELDYNL
| Type | Start | End | Length |
| CDS |
26962 |
26968 |
7 |
| CDS |
27204 |
27469 |
266 |
| CDS |
27530 |
27656 |
127 |
| CDS |
28495 |
28748 |
254 |
| CDS |
28818 |
32096 |
3279 |
| intron |
26969 |
27203 |
235 |
| intron |
27470 |
27529 |
60 |
| intron |
27657 |
28494 |
838 |
| intron |
28749 |
28817 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657046 |
U2 small nuclear ribonucleoprotein, putative [Aedes aegypti] gb|EAT45112.1| U2 small nuclear ribonucleoprotein, putative [Aedes aegypti] |
0.0 |
| InterPro |
IPR011989 |
Armadillo-like helical |
|
| InterPro |
IPR015016 |
Splicing factor 3B subunit 1 |
|
| InterPro |
IPR016024 |
Armadillo-type fold |
|
| Gene Ontology(MF) |
GO:0005488 |
binding |
|
| Pfam |
PF12755.2 |
Vacuolar 14 Fab1-binding region |
1.4e-06 |
| Pfam |
PF00514.18 |
Armadillo/beta-catenin-like repeat |
0.00042 |
| Pfam |
PF02985.17 |
HEAT repeat |
5.9e-13 |
| Pfam |
PF08623.5 |
TATA-binding protein interacting (TIP20) |
0.0061 |
| Pfam |
PF08064.8 |
UME (NUC010) domain |
0.053 |
| Pfam |
PF12348.3 |
CLASP N terminal |
0.0028 |
| Pfam |
PF13513.1 |
HEAT-like repeat |
5.7e-11 |
| Pfam |
PF13646.1 |
HEAT repeats |
1.4e-15 |
| Pfam |
PF08920.5 |
Splicing factor 3B subunit 1 |
3.7e-44 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV11085-PA |
| P. humanus |
PHUM257230-PA |
| D. melanogaster |
FBgn0031266 |
| S. invicta |
SI2.2.0_80122 |
| H. sapiens |
ENSP00000335321 |
| D. plexippus |
DPOGS206070PA |
| N. vitripennis |
NV15361-PA |
| A. aegypti |
AAEL003605 |
| A. mellifera |
GB16777-PA |
| P. vanderplanki |
Pv.08425 |
| A. gambiae |
AGAP000178 |
| H. melpomene |
HMEL005039-PA |
| B. mori |
BGIBMGA006851-TA |
| M. musculus |
ENSMUSG00000025982 |
| C. quinquefasciatus |
CPIJ801626 |
| P. vanderplanki |
Pv.11699 |
| T. castaneum |
TC012382 |