MidgeBase gene description page [Pn.08428]
Outline
| Gene ID | Pn.08428 |
| Type | Protein coding gene |
| Scaffold | PnScaf8092 |
| Start | 20280 |
| End | 21968 |
| Direction | + |
Sequence
Transcript: 1686 (bp)
ATGGAGTCACTGACGAAAGTACTCATCGTCCTGCTGTCCATGTTTATAGGACTGACCTCGGCAGCGAAACTCGCCAAGTATGAGAACGAAACAGCCGACACCATCTGTAAGGAAGACGGCTTGTTGTTGAAGGTTTGGGAACCACAGTATGGAATCACGATAGGCGACCGTTTCGCTCGCGGAGCTGCCTACTTCTTCGCCCTTTTCTATCTCTTCATCGGCGTCTCGATTGTGTCGGACCGCTTTATGGCGGCCATCGAGGTCATTACATCGAAGGAGAAGGAAGTGAAGATGAAGAAACCAAACGGCGAAGTCGCGATTGTCGTTGTGCGTGTGTGGAACGAAACTGTCGCAAATTTGACGCTCATGGCTCTGGGCTCGAGCGCTCCCGAGATCCTCCTTTCCGTCATAGAAATGTTCGCGAAGAACTTCGAAGCCGGTGACCTAGGCCCGGGCACCATCGTCGGTTCGGCCGCCTACAATCTCTTTGTCATCATCGCCATTTGTGTGCTGGTCATTCCGGATGGCGAGGTGCGTAAAATTAAGCACTTGCGCGTGTTCTTCGTCACCGCCACCTGGTCCGTCTTCGCATACATTTGGCTCTATCTTATCCTCGACGTCTTCTCGCCCAACATAGTCGAGGTTTGGGAAGGCTTCGTGACCTTCCTCCTCTTTCCAGCCACCGTCATCACTGCCTACATCGCCGACCGTCGTCTCCTCATCTACAAATACATCGGCAAGCGCTACCGCATGAACAAACGCGGCGTAATGGTGCAGACCGAGGCGTCGGAGCAGACGCTCGAGATGAATAACCACCTGGACGACAACTTCAAGGGACTCGAGGATGGAGCGCAGAGCGAAGAGGTGCGCGAGTTTGAGGACTCGCGACGCGAGTACATTACTGCGCTCAAAGAGCTCCGCAAGAAATACCCGCAGCATGACCTGGAGCAGCTCGAAATTATGGCGCACGAGCAGATCATGAACAAGGGACCGAAGTCGAGGGCCTTCTACCGCATCCAGGCAACGCGCAAGATGATGGGTAGCGGTAACATCATGCGCAAGATAAGCGAGCGCGCGCAGAGCGACCTTAGCGAGGTCAAGGCGGAGCTTCAGCGTGTCGATGTGATCGATCAAACCGACGACGGACACGCGTGCAAAGTCTTCTTCGAGCCCGGCCATTACACCGTCATGGAGAGCGTTGGCGACTTTGAGCTGCGTGTCGTGCGTCGCGGCGACCTCTCGCAACTGGTCACCGTCGACTTCGAAACGGAAGATGGCTCGGCCGAGGCTGGCAGCGATTACATCGGCAAAAAAGGCACGCTCACGTTTGCGCCGGGCGTAGATGAACAGCGCTTCCGCATTGAGGTCATCGACGACGATGTCTTCGAGCAGGATGAGCATTTTTATGTGCGCTTGAGCAACGTCAGTGACAATGCAACGCTCTCCACGCCAAAAGTCGCGACCGTCATGATCCTCGACGACGATCACGGCGGTATTTTCGCGTTCACTTCCAAGGACCATGAGCTGGTCGAGTCGGTCGGTACGTACGAGCTCAAGGTCCAACGATATTCGGGCGCGCGCGGAAAAGTTATCATACCGTACTGGACCGAGGATGGAACTGCCAAAGCTGGAAAGGATTACGAGGGAGCACGTGGCGAGCTTGTTTTCGAGAACAATGAAATTGAG
Protein: 562 (aa)
MESLTKVLIVLLSMFIGLTSAAKLAKYENETADTICKEDGLLLKVWEPQYGITIGDRFARGAAYFFALFYLFIGVSIVSDRFMAAIEVITSKEKEVKMKKPNGEVAIVVVRVWNETVANLTLMALGSSAPEILLSVIEMFAKNFEAGDLGPGTIVGSAAYNLFVIIAICVLVIPDGEVRKIKHLRVFFVTATWSVFAYIWLYLILDVFSPNIVEVWEGFVTFLLFPATVITAYIADRRLLIYKYIGKRYRMNKRGVMVQTEASEQTLEMNNHLDDNFKGLEDGAQSEEVREFEDSRREYITALKELRKKYPQHDLEQLEIMAHEQIMNKGPKSRAFYRIQATRKMMGSGNIMRKISERAQSDLSEVKAELQRVDVIDQTDDGHACKVFFEPGHYTVMESVGDFELRVVRRGDLSQLVTVDFETEDGSAEAGSDYIGKKGTLTFAPGVDEQRFRIEVIDDDVFEQDEHFYVRLSNVSDNATLSTPKVATVMILDDDHGGIFAFTSKDHELVESVGTYELKVQRYSGARGKVIIPYWTEDGTAKAGKDYEGARGELVFENNEIE
| Type | Start | End | Length |
| CDS |
20280 |
21965 |
1686 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663976 |
sodium/calcium exchanger [Aedes aegypti] gb|EAT33944.1| sodium/calcium exchanger [Aedes aegypti] |
0.0 |
| InterPro |
IPR003644 |
Na-Ca exchanger/integrin-beta4 |
|
| InterPro |
IPR004837 |
Sodium/calcium exchanger membrane region |
|
| InterPro |
IPR004836 |
Sodium/calcium exchanger protein |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(BP) |
GO:0007154 |
cell communication |
|
| Gene Ontology(BP) |
GO:0006816 |
calcium ion transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005432 |
calcium:sodium antiporter activity |
|
| Pfam |
PF01699.19 |
Sodium/calcium exchanger protein |
1.5e-38 |
| Pfam |
PF14171.1 |
Toxin SpoIISA, type II toxin-antitoxin system |
0.41 |
| Pfam |
PF03160.9 |
Calx-beta domain |
3e-51 |
| Pfam |
PF10279.4 |
Latarcin precursor |
0.84 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000385535 |
| H. sapiens |
ENSP00000385678 |
| H. sapiens |
ENSP00000349392 |
| H. sapiens |
ENSP00000440727 |
| T. castaneum |
TC009330 |
| H. sapiens |
ENSP00000437536 |
| H. melpomene |
HMEL010640-PA |
| A. aegypti |
AAEL012480 |
| P. vanderplanki |
Pv.07749 |
| H. sapiens |
ENSP00000370669 |
| B. mori |
BGIBMGA004795-TA |
| M. musculus |
ENSMUSG00000030376 |
| A. mellifera |
GB17418-PA |
| A. gambiae |
AGAP002859 |
| C. quinquefasciatus |
CPIJ005963 |
| H. sapiens |
ENSP00000385811 |
| H. sapiens |
ENSP00000433531 |
| C. quinquefasciatus |
CPIJ005951 |
| D. plexippus |
DPOGS204019PA |
| H. sapiens |
ENSP00000236877 |
| H. sapiens |
ENSP00000443515 |
| P. humanus |
PHUM098930-PA |
| H. sapiens |
ENSP00000385188 |
| H. sapiens |
ENSP00000436688 |
| H. sapiens |
ENSP00000377863 |
| D. melanogaster |
FBgn0013995 |
| M. musculus |
ENSMUSG00000079055 |
| H. sapiens |
ENSP00000383886 |
| H. sapiens |
ENSP00000350560 |
| S. invicta |
SI2.2.0_01481 |
| P. vanderplanki |
Pv.07730 |
| N. vitripennis |
NV15742-PB |
| H. sapiens |
ENSP00000216568 |
| A. aegypti |
AAEL013788 |
| H. sapiens |
ENSP00000436332 |
| H. sapiens |
ENSP00000384908 |
| H. sapiens |
ENSP00000332931 |
| B. mori |
BGIBMGA004794-TA |
| H. melpomene |
HMEL004209-PA |
| P. humanus |
PHUM409120-PA |
| S. invicta |
SI2.2.0_07214 |
| P. humanus |
PHUM409550-PA |
| N. vitripennis |
NV15742-PA |
| H. sapiens |
ENSP00000386116 |
| H. sapiens |
ENSP00000440588 |
| M. musculus |
ENSMUSG00000054640 |
| H. sapiens |
ENSP00000384763 |