MidgeBase gene description page [Pn.08424]
Outline
| Gene ID | Pn.08424 |
| Type | Protein coding gene |
| Scaffold | PnScaf8086 |
| Start | 2408 |
| End | 16991 |
| Direction | - |
Sequence
Transcript: 2544 (bp)
ATGCAATCAACAGACAAAGCGGAGAAAACCGTGAAAACAATAGACAAGACTGCAGTTGAGGGTAGAAAAGTATCGTTATCATGTCCACTGACAGCACCGTCCAGAGACAAAGTCTACATGGTCCTTTGGTTTAAGAATGATGTGAAAATTCCAATTTACAGTTTTGATGTTCGCGGGAAGCCGCTCGCTGAAGCTCGACACTGGTCAGCGCCCGAAATATTCGGATCTCGTGCCAAATTTAACACCGAAATAGAGCCTGCCGTGCTTGACATTGAAGACATTCGACGACACGATGAGGGAGTCTATCGATGTCGTGTCGATTTCCGCACAAGTCAAACGCAAAGCTTTAGATATAACTTAACGGTCATTATTTTACCTGAATATCCTGTTGTGCTGAATCGATGGGGCCGCCAATTAAATGGCACAATACTTGGTCCAAAGGAGGAGGGCGATGACGTTATATTAACATGCCGTGTTGTTGGCGGTCGTCCACCGCCGCAAGTTCGATGGCTCGTGAACGGGTTGATTGTTGACGATTCAGTGGAGCAGCAGTCGGGCGATGTCACCGAAAATCGATTAATGTGGCCTTCGGTGCAGAGGTCTGATTTAAATTCAATATTTACTTGTCAAGCGATAAACACTCAACTTGTCGAGGCACGAGAGAGCAGCTATGTGCTGGATCTACATCTGAAACCGCTGACGGTGGAAATAGTAAACAAAAAGCTTCCGCTGGTAGCAGACCGTCGTTATGAGATTCAGTGCGAGAGCGGCGGTTCACGACCGAACGCCATAATTACATGGTACAAAGGAAAGCGGCAGTTGAGAAGAGCTAAGGATGAGGCGCTCAACAACATCACAAAGTCGATTCTCAATTTCGTTCCAACGACAGATGACGACGGCAAATCAATAACGTGCCGTGCGGAAAACCCCAAAGTTTCGGGGCTGTTTCTCGAAACGACGTGGAAGATTGAAGTAATATATCCACCACTCGTCAGCCTTCGTCTCGGCTCAACACTGATAGTGGACGACATAAAGGAGGGAGATGATTTATATATGGAATGTCAGATTCAGGCTAACCCGAAATTCTCCAAAATGTATTGGATTCACAATGGAGCGCTGATATCGCACAACGCCAGTGCACGTGTGATACGATCGAATCAAAGTTTGGTGTTGCAGAAAATTACACGAGTTTCGAGTGGCAACTATTCATGCAGCGCGATTAATGCAGAAGGCGAAACGGTCAGCAATCAATTACCCTTGCGTGTAAAATATGCTCCAGTTTGCGCAGTCGACAAGACGATTATCGTTGGCGCGTTTCGGAGCGAGCATTTGAATGTAATATGCGAGGTGCACGCAGACCCACCGCCGAGGTCGTTCAAATGGAAGTTTAATAGCTCGGGCGAGACTTTCGAGTTGCCGAAGGAGCGTCACATCAAAAACGGATCCAAGAGTGTGCTGCAGTATACGCCGGTGATGGACCAGGATTATGGAACGCTGACGTGCGTGGGTCAGAACGAGGTGGGCGAGCAGGCGGTTCCGTGCGTTTTCCAAGTCATCCTCGCCGCATTACCCTCACCTGTCCGCAACTGCTCAATTAACAATCAAACGCAGCACTCGCTCGAGATTCAATGCATAGCCGGCTACGACGGCGGCCTACCGCAAATATTTCTGCTCGAATTGATCGGATCGAGAAGTGGAAAATTAAGATACAATCAAACCAATGTGGATGAGCCGCTTTTCATTATCGACTCAATGGATGCCTTCACAACGTTTGATACGTATGGCGACGAGACGCTGAGGGCCATAATTTTTTCCGTCAATCAAAAGGGCCGCAGCCATGGCGTGCTCGTAAAGGAATTTTTGCTCGACAGCAGCATCGAGAGCCGAGAAGCTATAGCGAATGCCGCACTCGATCTGTCGCCGGTATTATTGGGAGTTTTGTTCACACTTCTGCTGCTGTGCATCGCCATTTTCCTGAAGGTCTACTGTAATCGCTCGTCGGCGACGATGAGAGACTTGAACAGCGACACGAAACAGAATATGAATAGCATCAGCTACAGACACGACGCACAAAAGAAGAACGCACGGTGGCAGAGTAGCGATACAAAGACAAAGGAAATGAAGGCATTGGGCGACGTATTGGAGGACGAGAAGAACCCCGATGTCATACCGCAAGGTAAAAAGACTGAAAAGCCATTGGGTGCTCTTGCAGCGAACGCTAATTATGCATCAACAATCGGCGACGAAACGCCGGCAAATACGGAGTGGACGTGCGGATCTGTGAACTCCTATTACAATCAATTTATGCACCAAAATGCACGTCTCAAAGAAACATCCTCGCTCTCAACCGACTCGACGTTGATTGCGTCAACACCAAAATCGCAGTCGCTAGCATCGAATTGTCACGTCGAAGTGACGCCATCGAATCCGTTTTGCGCGACAAAAGCAAATGGCGAGGTGCCGACAAACTCAATAGACTATGATTTTAATATAAACGCTATTAAAACTTTATTGATGACCACGAAGGTTCCCGAAAGTTGTGTG
Protein: 848 (aa)
MQSTDKAEKTVKTIDKTAVEGRKVSLSCPLTAPSRDKVYMVLWFKNDVKIPIYSFDVRGKPLAEARHWSAPEIFGSRAKFNTEIEPAVLDIEDIRRHDEGVYRCRVDFRTSQTQSFRYNLTVIILPEYPVVLNRWGRQLNGTILGPKEEGDDVILTCRVVGGRPPPQVRWLVNGLIVDDSVEQQSGDVTENRLMWPSVQRSDLNSIFTCQAINTQLVEARESSYVLDLHLKPLTVEIVNKKLPLVADRRYEIQCESGGSRPNAIITWYKGKRQLRRAKDEALNNITKSILNFVPTTDDDGKSITCRAENPKVSGLFLETTWKIEVIYPPLVSLRLGSTLIVDDIKEGDDLYMECQIQANPKFSKMYWIHNGALISHNASARVIRSNQSLVLQKITRVSSGNYSCSAINAEGETVSNQLPLRVKYAPVCAVDKTIIVGAFRSEHLNVICEVHADPPPRSFKWKFNSSGETFELPKERHIKNGSKSVLQYTPVMDQDYGTLTCVGQNEVGEQAVPCVFQVILAALPSPVRNCSINNQTQHSLEIQCIAGYDGGLPQIFLLELIGSRSGKLRYNQTNVDEPLFIIDSMDAFTTFDTYGDETLRAIIFSVNQKGRSHGVLVKEFLLDSSIESREAIANAALDLSPVLLGVLFTLLLLCIAIFLKVYCNRSSATMRDLNSDTKQNMNSISYRHDAQKKNARWQSSDTKTKEMKALGDVLEDEKNPDVIPQGKKTEKPLGALAANANYASTIGDETPANTEWTCGSVNSYYNQFMHQNARLKETSSLSTDSTLIASTPKSQSLASNCHVEVTPSNPFCATKANGEVPTNSIDYDFNINAIKTLLMTTKVPESCV
| Type | Start | End | Length |
| CDS |
2411 |
2662 |
252 |
| CDS |
2721 |
2785 |
65 |
| CDS |
2870 |
3020 |
151 |
| CDS |
3382 |
3566 |
185 |
| CDS |
3627 |
3811 |
185 |
| CDS |
3936 |
4077 |
142 |
| CDS |
4147 |
4440 |
294 |
| CDS |
5937 |
6096 |
160 |
| CDS |
7087 |
7217 |
131 |
| CDS |
8211 |
8355 |
145 |
| CDS |
11090 |
11235 |
146 |
| CDS |
11992 |
12195 |
204 |
| CDS |
15058 |
15094 |
37 |
| CDS |
15238 |
15314 |
77 |
| CDS |
15459 |
15667 |
209 |
| CDS |
15732 |
15861 |
130 |
| CDS |
16961 |
16991 |
31 |
| intron |
2663 |
2720 |
58 |
| intron |
2786 |
2869 |
84 |
| intron |
3021 |
3381 |
361 |
| intron |
3567 |
3626 |
60 |
| intron |
3812 |
3935 |
124 |
| intron |
4078 |
4146 |
69 |
| intron |
4441 |
5936 |
1496 |
| intron |
6097 |
7086 |
990 |
| intron |
7218 |
8210 |
993 |
| intron |
8356 |
11089 |
2734 |
| intron |
11236 |
11991 |
756 |
| intron |
12196 |
15057 |
2862 |
| intron |
15095 |
15237 |
143 |
| intron |
15315 |
15458 |
144 |
| intron |
15668 |
15731 |
64 |
| intron |
15862 |
16960 |
1099 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_318742 |
AGAP009683-PA [Anopheles gambiae str. PEST] gb|EAA14139.4| AGAP009683-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR003598 |
Immunoglobulin subtype 2 |
|
| InterPro |
IPR007110 |
Immunoglobulin-like |
|
| InterPro |
IPR013783 |
Immunoglobulin-like fold |
|
| InterPro |
IPR013162 |
CD80-like, immunoglobulin C2-set |
|
| InterPro |
IPR013106 |
Immunoglobulin V-set |
|
| InterPro |
IPR003599 |
Immunoglobulin subtype |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00047.20 |
Immunoglobulin domain |
2.1e-19 |
| Pfam |
PF07654.10 |
Immunoglobulin C1-set domain |
0.0018 |
| Pfam |
PF08205.7 |
CD80-like C2-set immunoglobulin domain |
2.4e-18 |
| Pfam |
PF13895.1 |
Immunoglobulin domain |
3.9e-36 |
| Pfam |
PF07679.11 |
Immunoglobulin I-set domain |
2.3e-31 |
| Pfam |
PF13927.1 |
Immunoglobulin domain |
9.6e-24 |
| Pfam |
PF07686.12 |
Immunoglobulin V-set domain |
4.2e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.02871 |
| Pn.08539 |
| Pn.10456 |
| Pn.03442 |
| Pn.13851 |
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL004362-PA |
| D. plexippus |
DPOGS214714PA |
| C. quinquefasciatus |
CPIJ004618 |
| N. vitripennis |
NV15722-PA |
| A. aegypti |
AAEL009064 |
| A. gambiae |
AGAP004230 |
| P. vanderplanki |
Pv.12234 |
| A. mellifera |
GB18950-PA |
| D. plexippus |
DPOGS200711PA |
| A. aegypti |
AAEL002414 |
| P. humanus |
PHUM311500-PA |
| N. vitripennis |
NV15105-PA |
| A. mellifera |
GB12933-PA |
| P. vanderplanki |
Pv.11192 |
| D. plexippus |
DPOGS214704PA |
| P. humanus |
PHUM119370-PA |
| A. aegypti |
AAEL008236 |
| A. gambiae |
AGAP002104 |
| A. aegypti |
AAEL010645 |
| A. gambiae |
AGAP008320 |
| A. gambiae |
AGAP001824 |
| A. aegypti |
AAEL001227 |
| D. melanogaster |
FBgn0037736 |
| C. quinquefasciatus |
CPIJ017027 |
| C. quinquefasciatus |
CPIJ017012 |
| T. castaneum |
TC016379 |
| P. vanderplanki |
Pv.10948 |
| P. vanderplanki |
Pv.02121 |
| B. mori |
BGIBMGA004778-TA |
| N. vitripennis |
NV16046-PA |
| S. invicta |
SI2.2.0_13167 |
| H. melpomene |
HMEL011587-PA |
| A. gambiae |
AGAP001410 |
| B. mori |
BGIBMGA004752-TA |
| A. aegypti |
AAEL009943 |
| S. invicta |
SI2.2.0_03558 |
| P. humanus |
PHUM513440-PA |
| B. mori |
BGIBMGA001111-TA |
| C. quinquefasciatus |
CPIJ801393 |
| C. quinquefasciatus |
CPIJ005517 |
| P. vanderplanki |
Pv.01664 |
| S. invicta |
SI2.2.0_11008 |
| C. quinquefasciatus |
CPIJ003910 |
| A. gambiae |
AGAP009683 |
| A. mellifera |
GB16060-PA |
| A. mellifera |
GB18796-PA |
| D. plexippus |
DPOGS214757PA |
| P. humanus |
PHUM313690-PA |
| D. plexippus |
DPOGS200752PA |
| N. vitripennis |
NV18439-PA |
| A. aegypti |
AAEL000398 |
| P. vanderplanki |
Pv.09645 |
| T. castaneum |
TC009570 |
| T. castaneum |
TC009065 |
| P. humanus |
PHUM238090-PA |
| A. mellifera |
GB17838-PA |
| A. gambiae |
AGAP009596 |
| T. castaneum |
TC009058 |
| A. mellifera |
GB19889-PA |
| D. melanogaster |
FBgn0038156 |
| T. castaneum |
TC009768 |
| D. melanogaster |
FBgn0083950 |
| N. vitripennis |
NV12857-PA |
| D. plexippus |
DPOGS216214PA |
| D. melanogaster |
FBgn0086604 |
| D. melanogaster |
FBgn0259213 |
| N. vitripennis |
NV11323-PA |
| H. melpomene |
HMEL013021-PA |