MidgeBase gene description page [Pn.08393]
Outline
| Gene ID | Pn.08393 |
| Type | Protein coding gene |
| Scaffold | PnScaf8054 |
| Start | 71072 |
| End | 76752 |
| Direction | - |
Sequence
Transcript: 3432 (bp)
ATGTTTCACCTGCCGCATCATCGTGATAATATCGCGTTTCGAGAAGCCTACAGCGATGCATCTGCACTGCACAAAAATATTTCCAACTTGTCGGGCCACATGAAGCACTCGCAGATGGGACGTTCGGCCGAGGACGTGGCGTCGGTGCAGAAGAAGGACGGACTCACGCAAGTCCGCAAGGATCGTCTGCTGAACTTCAAGAAGTCACACATGAGCTACTCGACCGGCGACCTGCACCTCAACAACCGACCGAATCTGTCGCTCTTCGGCGACTTCCAGCTGAATGACTCGCAATTCTTCGAGGTCATGTATGTCGGGAAAATTCGCGTCTCGCACCGCAAACTCCCCAAAACATTCATCGACGATGCGATACCCAAGTTTATTGCCCACGATAAAATGAAAATGAAGAGCGTCGAGGTGATTGAGAAGCAACAGAGCGCCAACACCCAGCAAACCACGGAGCTGCGGGTCGACTCGCAGACCGAGGAGGAGAGCGACTCGTCGAGCATGAAGAGCGGCGACAGCAAGACCAACAACGAAGAGACTCCCCCGAAAAGACCGGTGATTCAGCGACTCGACTCCTTGCGCGCCGACGAGATTCCAAAGCGAAACCGCTCGGCCTCGTTCAGCACCATCGAGCAGAACCGGACGATGGTCTACATCCTCGGCCGGACGGACTTGCGGCTCATCAGCCCCGACCGCAAGCAAGTGCTGCTCCACAAAAACTTTGCCGACGTAATGATGGTGGTGCAGGGCGTCAATAACGCCGACCACTTTGGCATCATCTGCAACGAAATCAAGGACAACAGGCAGGAGTTTATCGGCTACGTCTTCAAGTGCCAGTCGGGCAGCATCGCGCACGATGTGGTGACTTCGATGACCAAATCTCTGGAGACTTTGGAGCAGGACAGAGTGAAGAAGGAGGCGGAGGAGAGCGCCGAGGAGATGAGGAAATCTGTGGCGCTGCAGTGCGACCACTGCCCACTCGTCTGGTACAGCAAACTGTCGAATTCCATTCACGGACTGAGCGAGAAAAAAGTTTATGGCGTCATAATGAAGCACATCGAGGAGCTGAGCACCGAGGACTATGAAATATTAATGGAAAAGTTCTTCGCTTCGGACAAAGTTAATGACTACTCGCAGGCCGAACGCAATAAATTTCTCATGGCGTTGATTGAGGCCCATTGTCAGCTGCGCCAACAGCGGCACGTGCACGACACCATCGAAAATCGATCGGAGTTTCTTCATCACTACCTTGGCGGCAGTACGATTCTCATGAAGGCCAAGCGCTCGCTGACGAGCTCGTTCGACCAGCTGCTGAAGAGGCGGGGCAGCAAGGACCTGGTCAGCGAGGAGAAGAGTCACGAGGAGGAACCGCGTCGGTTCAAGCCGATGCGGTCGATGTCGCTGTCATCGAATGTGACGCCGTTTGTGAGCGAGGCGGCCGAGAAGCAGCAGCAGTTACTGAACACATCAAAAATGGACATGTTCATCAAAGTAGGCAACACGTCAAAGGAGAGAAACAACCACAGCGTTTCGTGGCGCCAGAACATCCTGAAGACCGTCATTTTGACTGAAAAGGAGGATAATGACAAGCCCTGCCTCGACGACGACTCCCTCAAATTCCTCTCGAACAGATCAAAGCGAAGACAACGAGCGCCGAGAAAGAGAAATGCGGAGGAGTTGCGTGCCTTGTGGAAATTTGCGGGCAAACAAATTATTGTGCTTCTCCGCATGGAAAAGGAGAACGCTCGTTTGCAAGAGCAGCAAAACGAGCACGAAATCCGCCGTATGAAGCTCGACTACGACGAGATTGTGACGTGCGAGCAGAAGCTAATTGATGTGTGGGAGAAGTTCATTTATCAAGCGTCGCGCGCCGACTTTGACAGCCGCGTGTGTCTGCAGGCCATGAAGCAGGGCGTTCCTCGCTCGATCCGCGGCAGTGTCTGGACGATGCTCGCGAAGCAACAGCAAAAGTCCCATCCGGAGACGAACTTCTCGGAGTTTCCGAATTTCGACGTGCCATACGGGGAGCTGCTGAAGAATCTAACCGACCAGCAGCACGCGATTTTCCTCGACATCGGACGGACATTCCCGAATCACGAGTTCTACAAGGCTCCCTTCGGCATGGGCCAGCTCTCGCTCTTCAACGTCCTCAAGGCGTACTCGATTCTCGACAGCGAACTCGGCTACTGCCAAGGTCTCGCCTTCATTTGCGGCGTTCTTCTTCTTCACATGACCGAAGAGGAGGCCTTTTGGTTGCTCAAGTTCCTCATGTTTGACCGGCAACTGCGCCTCAACTACCTGCCGGACATGAAGCACTTCCAGCTGCAACTCTACCAGATGTCGCGACTCATCAAGGACCTCCTGCCCGAGGTGCACGAGCTCTTCGAGAAGAACGAGGTGGCGACGACTCTGTTCGCCTCCAGCTGGATGCTCACCATCTTCTCGTCCTCCTTCGAGCTCGGCTTTGTCACGCGTGTCTACGACCTGCTGCTGTTCGCATCGAACGAGGTCATTTTCCGCGTCATCCTCGCCCTCCTCGACGTCCACAAGGGCGAGCTGCTGAAGCTCGACTGCTTCGAGGACATCATGGGCTACCTGAAGAACGTCATTCCCAAGGTCGACGAGGACCGGATGCGGCAGATTCTCAAGCGCGTCTACGAGCTCAACATCTCGCGGCAACTACTCGACTACAAGGTCGAGTACAGCGTGCTGAAGGAGGAGCTGCAGAACACGACGCAGCACATCGAGAGCCTCAAGATGGCGCGCGAGGACATCAAGAACCTCCAGAAGCAGCTGCACACGGCCGAGCTGAACGTGGAGCGCCTCGAGGGCATTCGGCATGCGCAGCAGCAAGAAGCGCTCTCCATGCAGCTGCAGATCCAGAGCTTCGAGGTGACGATCCAAACGCTCGGCGACTTCGTTCACTCGCTGGCGACGAGCAGCCGGACGGACATCGATGTGCCGGCCGACGTTCGTCGGATCGTGCAGCAACTCGAGCACCAGCAGAACAAGCAACAGACGAAGCGGCGACCGATCTTCTTGGACAGGAAAATCGGCAAGTCGGTGTCGGTCAACAGCAACCTCGGCATGAGCCTGAAAGTGCTCATCGAGCAGAACGAGAACGACAATCAAACGCCGCCGTGCGCCATCACGCCCATCTCGGAGGGCGCGTCCACATCGCCGAGTGCGTGCGAGAAGAAGAAGCATTTTGACAAGGCATTTGAGCTGGTGAGGCAAGCGAGACTGGCGGAGTCGCCGGAGCGGCCGCGACTTATCGAGGAGGAGGAAATCAAGGAGGAAGAGATGAGCTGCCGCACTCAATCGTCACATCCGCTCGTCTGCGACGACGTCAATTTCCAGTTCAACACCATGCAACTAAAGACGATCCGGTCGACGAGCGCCTTCAAGAAGGAGGAGAAGCGCGAG
Protein: 1144 (aa)
MFHLPHHRDNIAFREAYSDASALHKNISNLSGHMKHSQMGRSAEDVASVQKKDGLTQVRKDRLLNFKKSHMSYSTGDLHLNNRPNLSLFGDFQLNDSQFFEVMYVGKIRVSHRKLPKTFIDDAIPKFIAHDKMKMKSVEVIEKQQSANTQQTTELRVDSQTEEESDSSSMKSGDSKTNNEETPPKRPVIQRLDSLRADEIPKRNRSASFSTIEQNRTMVYILGRTDLRLISPDRKQVLLHKNFADVMMVVQGVNNADHFGIICNEIKDNRQEFIGYVFKCQSGSIAHDVVTSMTKSLETLEQDRVKKEAEESAEEMRKSVALQCDHCPLVWYSKLSNSIHGLSEKKVYGVIMKHIEELSTEDYEILMEKFFASDKVNDYSQAERNKFLMALIEAHCQLRQQRHVHDTIENRSEFLHHYLGGSTILMKAKRSLTSSFDQLLKRRGSKDLVSEEKSHEEEPRRFKPMRSMSLSSNVTPFVSEAAEKQQQLLNTSKMDMFIKVGNTSKERNNHSVSWRQNILKTVILTEKEDNDKPCLDDDSLKFLSNRSKRRQRAPRKRNAEELRALWKFAGKQIIVLLRMEKENARLQEQQNEHEIRRMKLDYDEIVTCEQKLIDVWEKFIYQASRADFDSRVCLQAMKQGVPRSIRGSVWTMLAKQQQKSHPETNFSEFPNFDVPYGELLKNLTDQQHAIFLDIGRTFPNHEFYKAPFGMGQLSLFNVLKAYSILDSELGYCQGLAFICGVLLLHMTEEEAFWLLKFLMFDRQLRLNYLPDMKHFQLQLYQMSRLIKDLLPEVHELFEKNEVATTLFASSWMLTIFSSSFELGFVTRVYDLLLFASNEVIFRVILALLDVHKGELLKLDCFEDIMGYLKNVIPKVDEDRMRQILKRVYELNISRQLLDYKVEYSVLKEELQNTTQHIESLKMAREDIKNLQKQLHTAELNVERLEGIRHAQQQEALSMQLQIQSFEVTIQTLGDFVHSLATSSRTDIDVPADVRRIVQQLEHQQNKQQTKRRPIFLDRKIGKSVSVNSNLGMSLKVLIEQNENDNQTPPCAITPISEGASTSPSACEKKKHFDKAFELVRQARLAESPERPRLIEEEEIKEEEMSCRTQSSHPLVCDDVNFQFNTMQLKTIRSTSAFKKEEKRE
| Type | Start | End | Length |
| CDS |
71075 |
72271 |
1197 |
| CDS |
72410 |
72996 |
587 |
| CDS |
73084 |
73244 |
161 |
| CDS |
73316 |
74394 |
1079 |
| CDS |
74522 |
74851 |
330 |
| CDS |
76675 |
76752 |
78 |
| intron |
72272 |
72409 |
138 |
| intron |
72997 |
73083 |
87 |
| intron |
73245 |
73315 |
71 |
| intron |
74395 |
74521 |
127 |
| intron |
74852 |
76674 |
1823 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002073340 |
GK13206 [Drosophila willistoni] gb|EDW84326.1| GK13206 [Drosophila willistoni] |
0.0 |
| InterPro |
IPR011993 |
Pleckstrin homology-like domain |
|
| InterPro |
IPR021785 |
Protein of unknown function DUF3350 |
|
| InterPro |
IPR000195 |
Rab-GTPase-TBC domain |
|
| InterPro |
IPR006020 |
Phosphotyrosine interaction domain |
|
| Gene Ontology(BP) |
GO:0032313 |
regulation of Rab GTPase activity |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005097 |
Rab GTPase activator activity |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00566.13 |
Rab-GTPase-TBC domain |
1e-48 |
| Pfam |
PF11830.3 |
Domain of unknown function (DUF3350) |
8.7e-15 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL006791 |
| P. vanderplanki |
Pv.00518 |
| C. quinquefasciatus |
CPIJ001401 |
| A. gambiae |
AGAP003924 |
| P. humanus |
PHUM569740-PA |
| M. musculus |
ENSMUSG00000033083 |
| H. sapiens |
ENSP00000396932 |
| H. sapiens |
ENSP00000366852 |
| H. sapiens |
ENSP00000390654 |
| H. sapiens |
ENSP00000421641 |
| M. musculus |
ENSMUSG00000029174 |
| H. sapiens |
ENSP00000395986 |
| S. invicta |
SI2.2.0_02999 |
| H. sapiens |
ENSP00000261439 |
| H. sapiens |
ENSP00000396877 |
| A. mellifera |
GB12680-PA |
| H. sapiens |
ENSP00000366863 |
| H. sapiens |
ENSP00000423651 |
| N. vitripennis |
NV18668-PA |
| D. plexippus |
DPOGS205122PA |
| T. castaneum |
TC015747 |
| B. mori |
BGIBMGA011198-TA |
| D. melanogaster |
FBgn0261261 |