MidgeBase gene description page [Pn.08392]
Outline
| Gene ID | Pn.08392 |
| Type | Protein coding gene |
| Scaffold | PnScaf8054 |
| Start | 69167 |
| End | 70234 |
| Direction | - |
Sequence
Transcript: 543 (bp)
ATGAGGCCGTTAAAAATAACAACTGTGGGTGATGGTGCGGTGGGAAAGACATGTATGCTAATTTCATATACACAAAACGAATTTCCCGAGGAATATGTACCGACAGTATTTGATAATCATGCATGTACAATAAATGTGGATAATAAAGAGTATTCACTAACATTATGGGACACAGCTGGCCAAGAAGACTACGAGAGGCTGCGCCCCTTGAGCTACCCGAACACGGATTGCTTTCTGCTGTGCTACTCGATCGCATCACGAACATCCTTCGAGAACGTTACGTCGAAGTGGAGTCCTGAAATAAGACACTTCTCGCCACATGTTCCGATCGTCCTCGTCGGCACAAAGTCGGACTTGAGAATCCAGGGCTCGGAGAAGTTCGTCACGACGCACGAGGGCAAAAAGTTGGGCAAGAAGATCGGCGCGTACACGCTGGTCGAGTGCTCGGCGAAGAAGAAATCCAACTTGGTCAACGTGTTCGAGGAGGCCGTCCGAGCGGTCGAGAAGAAAAAGCCGGGCAAGGCTCCGTCGTGCCGCATTCTC
Protein: 181 (aa)
MRPLKITTVGDGAVGKTCMLISYTQNEFPEEYVPTVFDNHACTINVDNKEYSLTLWDTAGQEDYERLRPLSYPNTDCFLLCYSIASRTSFENVTSKWSPEIRHFSPHVPIVLVGTKSDLRIQGSEKFVTTHEGKKLGKKIGAYTLVECSAKKKSNLVNVFEEAVRAVEKKKPGKAPSCRIL
| Type | Start | End | Length |
| CDS |
69170 |
69372 |
203 |
| CDS |
69443 |
69560 |
118 |
| CDS |
69639 |
69673 |
35 |
| CDS |
69746 |
69757 |
12 |
| CDS |
69844 |
69851 |
8 |
| CDS |
69999 |
70058 |
60 |
| CDS |
70128 |
70234 |
107 |
| intron |
69373 |
69442 |
70 |
| intron |
69561 |
69638 |
78 |
| intron |
69674 |
69745 |
72 |
| intron |
69758 |
69843 |
86 |
| intron |
69852 |
69998 |
147 |
| intron |
70059 |
70127 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001652240 |
gtpase_rho [Aedes aegypti] ref|XP_001652241.1| gtpase_rho [Aedes aegypti] ref|XP_001652242.1| gtpase_rho [Aedes aegypti] gb|EAT41591.1| gtpase_rho [Aedes aegypti] gb|EAT41592.1| gtpase_rho [Aedes aegypti] gb|EAT41593.1| gtpase_rho [Aedes aegypti] |
7e-83 |
| InterPro |
IPR005225 |
Small GTP-binding protein domain |
|
| InterPro |
IPR001806 |
Small GTPase superfamily |
|
| InterPro |
IPR003579 |
Small GTPase superfamily, Rab type |
|
| InterPro |
IPR020849 |
Small GTPase superfamily, Ras type |
|
| InterPro |
IPR003578 |
Small GTPase superfamily, Rho type |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0006184 |
GTP catabolic process |
|
| Gene Ontology(BP) |
GO:0007264 |
small GTPase mediated signal transduction |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
9.1e-09 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
0.00047 |
| Pfam |
PF00071.17 |
Ras family |
1.5e-54 |
| Pfam |
PF08477.8 |
Miro-like protein |
2.8e-18 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM535910-PA |
| A. gambiae |
AGAP003092 |
| D. plexippus |
DPOGS204314PA |
| A. aegypti |
AAEL006786 |
| C. quinquefasciatus |
CPIJ001400 |
| D. melanogaster |
FBgn0014380 |
| P. vanderplanki |
Pv.00517 |