MidgeBase gene description page [Pn.08382]
Outline
| Gene ID | Pn.08382 |
| Type | Protein coding gene |
| Scaffold | PnScaf8054 |
| Start | 37570 |
| End | 39570 |
| Direction | - |
Sequence
Transcript: 1857 (bp)
ATGTCTGTAGCTTATTCTCCGAGTCAAAATCAGGCAAATCAGCCACCAAGACCGAATCTTCCTCCGCAGCAGCCGCAAAGACCCGGTCCGCCGCCGAACCCGGCGCAGATTCAGAAGATGCTCGACGAAAACTGCAGTCTGATCCAAACGATACAGGACTACCAGAACATGGGAAAGCCCAACGAATGCATCTCCCATCAGCAGGCTCTCCATCGTAATCTCCTCTATCTCGCCTCGCTCGCCGATTCCACACAAAACATGTCGCAGCTGTTGCCGCCCCCGCACATTTTGGCTCAAGGCGGGCCTCTGCCTCCTCCTCCGCCATCGATGATGAACGAGCCTCTTCAAGCGAACTACAATGCTCCCATGCAGCCGATGCAAATGCAGGGCAATCAGCCGATTCCACCGCCTCAGCACATGCAAATGCCCCCGCACGGCGGCGGAATGCCCCCCTCCTCACAGCCGCAACAGCAGCAACAACAACCGCCGCCGCAGCAAGGCCCTCATCAGATGATTCCGCAGCCACCGATGCAGCAGAATGTACCGGGCAATCAACCTATTCCCCCTACATCCCAAGCTTCGGCTCCAAATCAGCCATACAGAGTTCAAACGCCGAGTTCGCAGCAGCCGCCGGTGACTGCGCCGAATCAAGCTCCTATCACGTCACAAGCTCAAATCAACTCGCCTCAACCCGTTACGACTCAGCCACAGGCGGCACAGCAGCAGCAACAACAACAACAGCAGCAGACGCCAGTGACAAGAGGAGGCCCGAACGTTCCACCGCCTCCCACTCAAGGAAGCAACCCCGCCAACTCTCCCGCTCCCTCTCAACAGACGCCCGGCGCAAATGTTCCGCCGCCGCCGCAGCAGCAGCAGCCGAATGCACCGCCTCAGGCCTATCAGCAGCGCGCGCCGTATCCGCACTCGCCCTACGGATATCCTCCTCAGAATCAGCCACCCTACCAGCCCGGCTACATGTATGGGCCGCCCAATCAGCCCTACCAACATCCGAGCGCTTATCACGTTCCGCCTGGCGGTCCACCTCCGCCGCAGGGACAGTACGGGCAGTATCCGTATCCGCCGCAGCAAGGACCGCCTCCTCCGGGTCAGTACGTGCCACCGGCCAATGGCCCGCCCATGAACTATTATCCCGGCTATGCACAGGGTCAAATGCCTCCTAATCCGAATCAGCCATACGGCCCGCCGCCACCCGGACAAGGATATCCTCCGCATCAGCAGCCATATGCGCCGTATGCTCCGCAGGCTCCGATCGGGGCGCAGCAAGGTCCACAGCAAGCCCCTGTTGCTCAGCCTCCGCAACAGCAGCAGCAGCAACAACAACAACAGCAACAGTCGCAAAGCACTCCTGTGACTTCGGCTCCAACTCCTGTCAGCACCAACAGCGGCCCAACAACTTTCAGCACAAATCAGTCGAGTCCGCAACCGCAGGCGACCTCGCCGAATCCGCAGACTCCTCCTATTCCGACATCGTCTCAATCGTATGCGCCAGCTCCCGTTGTGGTGCCACCGCCGCCAACACCGACGACCGCTCCTGGTGCCGTCGCTCCGCCTCCGACTTCACAGCAGCCGAACAGCTATCAGGCACCGGTCAATGCACAGGCTCCGCAAAACTTTCCGCCACCGCCCGTCGTCCCCTACTCTGGTCCCGGACAGTACGCACAAACGCCGCCCGTTCCCGGGCAAGCGTACCAAGGCGGCAACTATCCACCTCCTCCGCACCACTACCAGCCGCAAGGCTATCCCATGCCAGCCCAACCTTACAATCCGAATTATGCGCCGGGCGGCTATCAGAGGCCGCCGCCGGGTCAGAACAACTACTACTACGGACCTCCTCAG
Protein: 619 (aa)
MSVAYSPSQNQANQPPRPNLPPQQPQRPGPPPNPAQIQKMLDENCSLIQTIQDYQNMGKPNECISHQQALHRNLLYLASLADSTQNMSQLLPPPHILAQGGPLPPPPPSMMNEPLQANYNAPMQPMQMQGNQPIPPPQHMQMPPHGGGMPPSSQPQQQQQQPPPQQGPHQMIPQPPMQQNVPGNQPIPPTSQASAPNQPYRVQTPSSQQPPVTAPNQAPITSQAQINSPQPVTTQPQAAQQQQQQQQQQTPVTRGGPNVPPPPTQGSNPANSPAPSQQTPGANVPPPPQQQQPNAPPQAYQQRAPYPHSPYGYPPQNQPPYQPGYMYGPPNQPYQHPSAYHVPPGGPPPPQGQYGQYPYPPQQGPPPPGQYVPPANGPPMNYYPGYAQGQMPPNPNQPYGPPPPGQGYPPHQQPYAPYAPQAPIGAQQGPQQAPVAQPPQQQQQQQQQQQQSQSTPVTSAPTPVSTNSGPTTFSTNQSSPQPQATSPNPQTPPIPTSSQSYAPAPVVVPPPPTPTTAPGAVAPPPTSQQPNSYQAPVNAQAPQNFPPPPVVPYSGPGQYAQTPPVPGQAYQGGNYPPPPHHYQPQGYPMPAQPYNPNYAPGGYQRPPPGQNNYYYGPPQ
| Type | Start | End | Length |
| CDS |
37573 |
39153 |
1581 |
| CDS |
39223 |
39418 |
196 |
| CDS |
39491 |
39570 |
80 |
| intron |
39154 |
39222 |
69 |
| intron |
39419 |
39490 |
72 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002067230 |
GK16293 [Drosophila willistoni] gb|EDW78216.1| GK16293 [Drosophila willistoni] |
2e-23 |
| InterPro |
IPR007726 |
SSXT |
|
| Pfam |
PF05030.7 |
SSXT protein (N-terminal region) |
6.6e-31 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06278 |