MidgeBase gene description page [Pn.08366]
Outline
| Gene ID | Pn.08366 |
| Type | Protein coding gene |
| Scaffold | PnScaf8047 |
| Start | 11445 |
| End | 15022 |
| Direction | - |
Sequence
Transcript: 2364 (bp)
ATGGAGATTTTGTTTGTCGCCGTTGCCGTTGTGATATCGAAAGTGGTTAATTGTGTGGACGCTAAGGATGAGATTCTCGAGAAGATTTCCAAAGCGGGCTACACTGGCGAGTTTAATGAGATACAAACAGAGGATGACTACATCATCGGCGTTCACAAAATAAATTCGCGAAACTCGACTGCAACAAAGTATCCGATATTCATTATGCACGGCTTTTTAACGACACCTATGAGCTTCTTTCTGACAGAGAAATTCAACTCGCTACCATTAATTCTCGCAGACAACGGCCACGATGTGTTTCTCGGATCGCGTCGCGGCACGAAATATTCAACAAAACATCGACGCTTGTCGACGGAATCGCGCGAATACTGGAATTTCGACTGGCACGAAATCGGATACTATGATCTTAAGGCGATCATTGACTTCATCATGGAAAGTTCTCGCGCCAGAAAAATATTTTTCATCGGCTATTCGCAGGGAAATACGGAACTGCTCGTTTTGCTGTCGATGAGGCCCGAGTACAACGACGTCATTGTTCAAGCACATTTAATGTCATGCGTCGGAGCAATGAATAGCGTCCATGAGCTCGGACACTTCCTCAGTCCTTTGTTGCTCAACTATGCTTCAACGCACGATGACTTCTACTACTTGAACATGGAGTCGCTCAAGCCGCTTCAAGTGGAGTTGGCGAAAATGCTGTGCAGCTCGCTCCGGCCGTTCCGAGTCGGATTGTGCAAGAACATCATTTTTTTCATGGTTGGCCGCAATCATCGGTCGACAGAAGTCGATCCGGTGACGTATGTGAAGGTGTTCAAACACCTGTCACCGAAAGTCGGCGTCAAACAACTGCTGCACACAGCGCAGCTGATAATGTCGGCGAGATTTCAGCAGTTCGACTATGGAAGCGAGCGGAATGTCGCTCTCTACAACTCCACGCAGCCGCCCGAGTACGACTTGAGGAAAGTCATTGCCCCGATTTACCTATATGTTGGCGAGGAAGATATCATATTCAATCGGAAGGACACTGAACGGCTTGCGAAAATACTGCCAAACATCGTGCACTACAAAATGATCGCAAACTACAACCACTTTGATTTTGTTTACGGTCGAAACTCCCATAAATTATTGTACAAAGAAATTCTCGATTTTATCGAGTCAAGCGTTCTTCTCATCAAGAATCAGTCTGTCTGCGACATTTCGATAGAAAAGATGAAAACACTCTTGCTCGTTCTAAATATATTTTTCTGCATCAGCTTTGGTCGCGAGAATGCCGACAGCGATCAAGCGCTTCAATTGATTGTGAATGCAGGCTATCAAGGAGAGGTTTACGAGACTGAGACACAAGACGGATATGGATTGAAGATACATCGAGTCATACCGCGATTTCACAACGGACGCGAGCCCGTGGTGTTGATGCACGGACTGCTCGCGACAGCATCCGATTTCTTAATCACCGGTCCGAAAATTGCCCTTGCCTTTCTACTCGCAGATAACGGTTACGATGTGTATCTGGGCAACAGTCGGGGAAGTAAACATTCGACGAAACATCGTATTTACACAACAGATTCCACAGAATATTGGAAATTTAGCTGGCATGAGATCGGGTTTTACGATCTCGCTGCAATCATTGACTTCGTGTTGAAACGAACTGGCGCGCCAAAAACTAATTTTATTGCATTTTCGCAAGGCACAACGAGCCTGCTCGTGCTACTATCTTCGCGTCCGGAGTATAATGACAAAATTCGGCAAGCCCACATGATGGCACCGCCTGCATTTAGAAAGAAGTTGCCAAAATCTCAAATCGTCTTCAGCGTTCTCAAATTCTTGGACAGACACGAGGAATTCAGGTTTTGCGATTTGCGGCGACTTTTCAAAATTGGCAAGAAAATAAGCAAAACCATATGCAGAGACAATGACCTCTTGTCGTTTAGACTTTGCAAATTTTTGATTCAGAGCGTTTTCAGTGTGGATAGTTCGAAGGAACTGGAAATTGAGACGAAAATTCTGCCCCAGCTAATCCAGTATTTGTCGCCGCGTGTGAGCGTCATGCAACTCACGCACTACTATCAGAACATGATAACGAACACATTTCGCCGCTTCGACTACAAGGAGAGAAACCTCCTGTTCTACAATTCCTCAGTGCCGCCGGATTACAACTTGTCGCAAGTCACTACGCCAATGTTCTTGTACCATGCCGGCTTGGACAGATTTATAACGCAAGCGGGAGTTGCACACTTGAGAAGCCTCTTGCCGAACGTTCACGGATATCGAGTGCTGAGCAATTGGAGTCACATTGACTTTGTTTATTCTAAATATTCACGAGACATTCTCTATAACGATATTGTTCACGCCTTAACGACAGTC
Protein: 788 (aa)
MEILFVAVAVVISKVVNCVDAKDEILEKISKAGYTGEFNEIQTEDDYIIGVHKINSRNSTATKYPIFIMHGFLTTPMSFFLTEKFNSLPLILADNGHDVFLGSRRGTKYSTKHRRLSTESREYWNFDWHEIGYYDLKAIIDFIMESSRARKIFFIGYSQGNTELLVLLSMRPEYNDVIVQAHLMSCVGAMNSVHELGHFLSPLLLNYASTHDDFYYLNMESLKPLQVELAKMLCSSLRPFRVGLCKNIIFFMVGRNHRSTEVDPVTYVKVFKHLSPKVGVKQLLHTAQLIMSARFQQFDYGSERNVALYNSTQPPEYDLRKVIAPIYLYVGEEDIIFNRKDTERLAKILPNIVHYKMIANYNHFDFVYGRNSHKLLYKEILDFIESSVLLIKNQSVCDISIEKMKTLLLVLNIFFCISFGRENADSDQALQLIVNAGYQGEVYETETQDGYGLKIHRVIPRFHNGREPVVLMHGLLATASDFLITGPKIALAFLLADNGYDVYLGNSRGSKHSTKHRIYTTDSTEYWKFSWHEIGFYDLAAIIDFVLKRTGAPKTNFIAFSQGTTSLLVLLSSRPEYNDKIRQAHMMAPPAFRKKLPKSQIVFSVLKFLDRHEEFRFCDLRRLFKIGKKISKTICRDNDLLSFRLCKFLIQSVFSVDSSKELEIETKILPQLIQYLSPRVSVMQLTHYYQNMITNTFRRFDYKERNLLFYNSSVPPDYNLSQVTTPMFLYHAGLDRFITQAGVAHLRSLLPNVHGYRVLSNWSHIDFVYSKYSRDILYNDIVHALTTV
| Type | Start | End | Length |
| CDS |
11448 |
11588 |
141 |
| CDS |
12025 |
12249 |
225 |
| CDS |
12319 |
12489 |
171 |
| CDS |
12638 |
12951 |
314 |
| CDS |
13015 |
13368 |
354 |
| CDS |
13704 |
13842 |
139 |
| CDS |
13920 |
14462 |
543 |
| CDS |
14546 |
15022 |
477 |
| intron |
11589 |
12024 |
436 |
| intron |
12250 |
12318 |
69 |
| intron |
12490 |
12637 |
148 |
| intron |
12952 |
13014 |
63 |
| intron |
13369 |
13703 |
335 |
| intron |
13843 |
13919 |
77 |
| intron |
14463 |
14545 |
83 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFA01615 |
hypothetical protein TcasGA2_TC007184 [Tribolium castaneum] |
1e-103 |
| InterPro |
IPR006693 |
Partial AB-hydrolase lipase domain |
|
| InterPro |
IPR000073 |
Alpha/beta hydrolase fold-1 |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Pfam |
PF06057.6 |
Bacterial virulence protein (VirJ) |
0.028 |
| Pfam |
PF00561.15 |
alpha/beta hydrolase fold |
3.1e-25 |
| Pfam |
PF13813.1 |
Membrane bound O-acyl transferase family |
0.064 |
| Pfam |
PF11288.3 |
Protein of unknown function (DUF3089) |
0.042 |
| Pfam |
PF12146.3 |
Putative lysophospholipase |
0.03 |
| Pfam |
PF01738.13 |
Dienelactone hydrolase family |
0.0082 |
| Pfam |
PF12695.2 |
Alpha/beta hydrolase family |
4.5e-15 |
| Pfam |
PF12697.2 |
Alpha/beta hydrolase family |
4.1e-22 |
| Pfam |
PF04083.11 |
Partial alpha/beta-hydrolase lipase region |
3.2e-26 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.16810 |
| B. mori |
BGIBMGA014574-TA |
| B. mori |
BGIBMGA012649-TA |
| B. mori |
BGIBMGA014575-TA |
| H. melpomene |
HMEL005562-PA |
| B. mori |
BGIBMGA012745-TA |
| H. melpomene |
HMEL018012-PA |