MidgeBase gene description page [Pn.08365]
Outline
| Gene ID | Pn.08365 |
| Type | Protein coding gene |
| Scaffold | PnScaf8047 |
| Start | 9751 |
| End | 11085 |
| Direction | - |
Sequence
Transcript: 1206 (bp)
ATGTTCTGCAGAATTTTTTTCGCGGTCATCTTAATTTGTGGCTCAGACGCAGTGTTTCTGAAGAAATACGAGGAGGAAGGCGACGACGTGCTGAAGCTGATAAGGAGAGCCGGCTACAGAGGAGAGTCCTATTACGTAAGGCCAGAGGACGATTTGGGATGGACGCTAAAAATGCACAGGATTCTGCCGAGAAATGGACAAAGCGGTGCACAGCCAGTCTTTCTCATGCACGGCCTCTTTGCTGCATCCGCCGACTATGTGATCACGGGAAGAAAAATCGCACTTGCCTATTTGCTGGCTGACAACAATTACGATGTGTTCATAGGAAACTCACGAGGTAATCGACACGCGAGACTGACGAAAGACGCTAATCAGAGCACAGTTTGGAATTTTTCGTTCAATGAAATCGGAAGCTATGACGTCGCTGCAATGATTAACCGAGCACTGCAGATTAATGGAAGAGATAAGCTTTTTTATGTCGGCCACTCGCAAGGAACTTCAAGCGTACTTGCACTTTTGGCAAATAGACCAGAGTACAACAGCAAAATCATTCAAGCTCATCTTTTAGCGCCGGTTGCATTCACGAAGTATCTGCCGAATCCGTGGCTCAAAGACATCATCCATCCGTTAATGAATCTCTTCGAGAAGCAAAAAGTGAAGTATGTAAATTTTTCCGACATTTTCAACATCGGCAGTTCGCTGAGCACCGTTTTGTGCAACGATACCGTCAGCGGTTTCACCACCGAGTTTTGCAAGGCGATCATTTATGCCATCGTTGGCACGAACACCTATCAAGAGGAGATCGATACGAGGATTCTGCCGGACTTGATCAATCACATATCGTGGAAGTTGAGTGCGCAGCAGCTGGTGCACTATGGCCAGATGTATTTCAGTGGAAAATTCAGAAAATATGACTACAAGAGCGAGAACATGCGTATTTATGGAGCACCAGAGCCGCCCGAATATGACTTGTCGAAAGTCAGAGCGCCAATGTATTTATATCGTGGCCCAGAAGACTTGCTCGCGTCGAAACAGGATGTCGAGCACTTAGTCAAATTGCTGCCAAATGTGAAGCATTATCGTGTGGTTCCAAACTTTAATCATCTTGATTTTACCTATGGCCGTCGCACACGAAAAGTGCTTTATAATGACATTTTAAATTTTATAAGAGCAGATAGCTCGGACCATTCGAACTACGTCCGATAC
Protein: 402 (aa)
MFCRIFFAVILICGSDAVFLKKYEEEGDDVLKLIRRAGYRGESYYVRPEDDLGWTLKMHRILPRNGQSGAQPVFLMHGLFAASADYVITGRKIALAYLLADNNYDVFIGNSRGNRHARLTKDANQSTVWNFSFNEIGSYDVAAMINRALQINGRDKLFYVGHSQGTSSVLALLANRPEYNSKIIQAHLLAPVAFTKYLPNPWLKDIIHPLMNLFEKQKVKYVNFSDIFNIGSSLSTVLCNDTVSGFTTEFCKAIIYAIVGTNTYQEEIDTRILPDLINHISWKLSAQQLVHYGQMYFSGKFRKYDYKSENMRIYGAPEPPEYDLSKVRAPMYLYRGPEDLLASKQDVEHLVKLLPNVKHYRVVPNFNHLDFTYGRRTRKVLYNDILNFIRADSSDHSNYVRY
| Type | Start | End | Length |
| CDS |
9754 |
9924 |
171 |
| CDS |
9984 |
10208 |
225 |
| CDS |
10276 |
11085 |
810 |
| intron |
9925 |
9983 |
59 |
| intron |
10209 |
10275 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001844302 |
lipase 1 [Culex quinquefasciatus] gb|EDS36642.1| lipase 1 [Culex quinquefasciatus] |
6e-65 |
| Pfam |
PF00561.15 |
alpha/beta hydrolase fold |
4.9e-12 |
| Pfam |
PF12695.2 |
Alpha/beta hydrolase family |
1.3e-11 |
| Pfam |
PF11288.3 |
Protein of unknown function (DUF3089) |
0.042 |
| Pfam |
PF12697.2 |
Alpha/beta hydrolase family |
4.9e-14 |
| Pfam |
PF04083.11 |
Partial alpha/beta-hydrolase lipase region |
9.9e-14 |
| Pfam |
PF10142.4 |
PhoPQ-activated pathogenicity-related protein |
0.11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.16811 |