MidgeBase gene description page [Pn.08335]
Outline
| Gene ID | Pn.08335 |
| Type | Protein coding gene |
| Scaffold | PnScaf7999 |
| Start | 1358 |
| End | 1862 |
| Direction | + |
Sequence
Transcript: 348 (bp)
ATGCTAAAATACGTTACAGTGGTGAATGTGTGTTGGGTGCCATTTTTCTGTGTCAACATCGTGGCGGCATTCTGCAAGACATGCATCGGCGGGCAGACCTTCAAAATCCTCTCGTGGCTCGGCTACTCGAACTCGGCATTCAACCCGATCATCTACTCGATTTTCAACACGGAGTTCCGCGAGGCGTTCAAGCGAATCCTCACGACCAAGGCGGCGCTGTGTTGCGCCGAGGACATCAACTACCACTGTCGCAACTCGGAGCGCTTCGTCACGGACTACCAGTCGGCCAAGTGCTCGCACATCCACTCGGGCCGATCGTCGGCCGACCTCGAGCAGGTGTCAGCTATT
Protein: 116 (aa)
MLKYVTVVNVCWVPFFCVNIVAAFCKTCIGGQTFKILSWLGYSNSAFNPIIYSIFNTEFREAFKRILTTKAALCCAEDINYHCRNSERFVTDYQSAKCSHIHSGRSSADLEQVSAI
| Type | Start | End | Length |
| CDS |
1358 |
1385 |
28 |
| CDS |
1540 |
1859 |
320 |
| intron |
1386 |
1539 |
154 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001358682 |
GA21941 [Drosophila pseudoobscura pseudoobscura] gb|EAL27825.2| GA21941 [Drosophila pseudoobscura pseudoobscura] |
6e-43 |
| InterPro |
IPR017452 |
GPCR, rhodopsin-like superfamily |
|
| InterPro |
IPR000276 |
GPCR, rhodopsin-like, 7TM |
|
| Gene Ontology(BP) |
GO:0007186 |
G-protein coupled receptor signaling pathway |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF05210.8 |
Sprouty protein (Spry) |
0.013 |
| Pfam |
PF00001.16 |
7 transmembrane receptor (rhodopsin family) |
8.4e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.13425 |
| Pn.04900 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.02117 |
| M. musculus |
ENSMUSG00000021478 |
| B. mori |
BGIBMGA002277-TA |
| D. plexippus |
DPOGS202585PA |
| N. vitripennis |
NV10767-PA |
| H. sapiens |
ENSP00000327652 |
| H. melpomene |
HMEL003917-PA |
| A. aegypti |
AAEL003920 |
| C. quinquefasciatus |
CPIJ000649 |
| M. musculus |
ENSMUSG00000039358 |
| A. gambiae |
AGAP004613 |
| B. mori |
BGIBMGA002275-TA |
| D. melanogaster |
FBgn0011582 |
| P. humanus |
PHUM434420-PA |
| H. sapiens |
ENSP00000377353 |
| T. castaneum |
TC012447 |
| B. mori |
BGIBMGA002276-TA |
| H. sapiens |
ENSP00000306129 |
| P. vanderplanki |
Pv.17527 |
| C. quinquefasciatus |
CPIJ000647 |
| S. invicta |
SI2.2.0_02156 |