MidgeBase gene description page [Pn.08311]
Outline
| Gene ID | Pn.08311 |
| Type | Protein coding gene |
| Scaffold | PnScaf7990 |
| Start | 3364 |
| End | 5695 |
| Direction | + |
Sequence
Transcript: 1452 (bp)
ATGACGAGAGACAATGAGAAAAATGTAAGCGATGAGCTGACAGATCCAACGCCAGTATGGAAGCGAAGGCGCTACTTTGTCGTGTTCATGGCATTTCTCGGACTCTTTAACGTCTATTCGCTGCGGTCAAATCTCAACGTCGCGATTGTCTCCATGACAGAAAACCGCACAATTGAGCACGACGATGGAAGCGTCAGCTTCGAGCAGCATTTCAATTGGAACTCGAAGGAGAAGGGCTACGTTCTCTCCTCTTTCTACTACGGCTATCTCTGCACGCAAGTGATTGGCGGCGTGATTGCGGCGAAAATTGGCGGCAATATTCTGTTTGGCGTCGGCATCGGCGTGACTGCCGTTTTCACTTTGTTATCGCCGCTGGCGGCAAACTGGAGTCTCTATGCACTGATTGCCGTGCGCATCATTGAAGGCCTCTTCGAGGGAGTCACCTATTCGGCACTCTATGAAATGTGGTCGAAATGGGCACCTCCATTTGAACGATCTCGAATGGTGGTAGCAGCTTTTACCGGAAACTATGTTGGACTGGTAATCAGCATGCCGGTATCGGGAATTTTGGCTGCAACTGTCGGCTGGGAGTGGGTGTTCTATGTGTTTGGCATCATCGGATGTGTGTGGACAGTTTTGTGGCTGACACTCGTCAGTAGAAGCCCGGGAAGAGATCCTTTCATCAGCAAAGAGGAGCGAAGGTACATCGAACGCTCGCTGAACAGACAATCAAAGGACAAAGAGGTTAAAATTCCGTGGCTTTCGATTTGGACTTCCAGTGCTGTTTGGGCAATCATCGCCGCACAATTCTCAGAAGGCTGGGGCTTCTTCACCCTGCAGACTCAACTGCCTCAGTTCCTCAAGGACGCTCTCGACTTCGACATCGCCAAATCGGGATTAGTCTCTGCGCTTCCCTACTTATGCATGACTGTGATGCTGCAAGTGGCCGGCTTCCTCTCCGACTGGGTTCGCATCAAAGGCTACTGGACAACCGGTCAAACTAGACGATACTTCAACTGCTCGGCGTTCATTGGACAAATGGTTTGCATGCTCTTAGCCGCTTTCTTCCTCTCACCGGTTTCATCAGTGACCTTCATTACGATTGGAGTTGCCTTGGCCTCTTTCGCATACTCAAGCTTCTCCGTAAATTACCTCGATATTGCTCCGCAATTCGCTGGTGTTCTAATGGGAATCTGCAACAGTTTCGCTACTGTCGCAGGGATTGTTTCGCCGATATTGACAGGCTACATTGTCACGGATGCTGATCCCGAACAATGGAAGATAATCTTCTACATCGCTGGCGGCATTTATCTGTTCGGTGCCATTGTATACTGGATCTGGGCGCAAGGGGAAGTGCAAGCATGGGCGATTCAAGAAGAGATTGAATCAACAGACGACTCAGAAATGTCACCAGAGAAAGGCGTTGTAAACCCCGCTTTGGAACTGAAGGAA
Protein: 484 (aa)
MTRDNEKNVSDELTDPTPVWKRRRYFVVFMAFLGLFNVYSLRSNLNVAIVSMTENRTIEHDDGSVSFEQHFNWNSKEKGYVLSSFYYGYLCTQVIGGVIAAKIGGNILFGVGIGVTAVFTLLSPLAANWSLYALIAVRIIEGLFEGVTYSALYEMWSKWAPPFERSRMVVAAFTGNYVGLVISMPVSGILAATVGWEWVFYVFGIIGCVWTVLWLTLVSRSPGRDPFISKEERRYIERSLNRQSKDKEVKIPWLSIWTSSAVWAIIAAQFSEGWGFFTLQTQLPQFLKDALDFDIAKSGLVSALPYLCMTVMLQVAGFLSDWVRIKGYWTTGQTRRYFNCSAFIGQMVCMLLAAFFLSPVSSVTFITIGVALASFAYSSFSVNYLDIAPQFAGVLMGICNSFATVAGIVSPILTGYIVTDADPEQWKIIFYIAGGIYLFGAIVYWIWAQGEVQAWAIQEEIESTDDSEMSPEKGVVNPALELKE
| Type | Start | End | Length |
| CDS |
3364 |
3389 |
26 |
| CDS |
3839 |
3949 |
111 |
| CDS |
4017 |
4200 |
184 |
| CDS |
4270 |
4435 |
166 |
| CDS |
4496 |
4807 |
312 |
| CDS |
4866 |
4992 |
127 |
| CDS |
5059 |
5395 |
337 |
| CDS |
5454 |
5490 |
37 |
| CDS |
5541 |
5692 |
152 |
| intron |
3390 |
3838 |
449 |
| intron |
3950 |
4016 |
67 |
| intron |
4201 |
4269 |
69 |
| intron |
4436 |
4495 |
60 |
| intron |
4808 |
4865 |
58 |
| intron |
4993 |
5058 |
66 |
| intron |
5396 |
5453 |
58 |
| intron |
5491 |
5540 |
50 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001995842 |
GH14168 [Drosophila grimshawi] gb|EDV90500.1| GH14168 [Drosophila grimshawi] |
1e-155 |
| InterPro |
IPR020846 |
Major facilitator superfamily domain |
|
| InterPro |
IPR011701 |
Major facilitator superfamily |
|
| InterPro |
IPR016196 |
Major facilitator superfamily domain, general substrate transporter |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF10183.4 |
ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) |
9.2 |
| Pfam |
PF03092.11 |
BT1 family |
0.00021 |
| Pfam |
PF07690.11 |
Major Facilitator Superfamily |
3.5e-57 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.13704 |
| Pn.13703 |
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV17997-PA |
| N. vitripennis |
NV17996-PA |
| C. quinquefasciatus |
CPIJ007436 |
| A. aegypti |
AAEL004256 |
| A. gambiae |
AGAP006595 |
| C. quinquefasciatus |
CPIJ007435 |
| C. quinquefasciatus |
CPIJ007431 |
| A. aegypti |
AAEL004268 |
| P. vanderplanki |
Pv.11409 |
| B. mori |
BGIBMGA010861-TA |
| C. quinquefasciatus |
CPIJ007429 |
| A. mellifera |
GB17692-PA |
| P. humanus |
PHUM426610-PA |
| N. vitripennis |
NV15187-PA |
| P. vanderplanki |
Pv.12044 |
| T. castaneum |
TC010895 |
| P. humanus |
PHUM601610-PA |
| C. quinquefasciatus |
CPIJ007430 |
| D. melanogaster |
FBgn0038799 |
| C. quinquefasciatus |
CPIJ007434 |
| C. quinquefasciatus |
CPIJ007428 |
| D. plexippus |
DPOGS211401PA |
| A. aegypti |
AAEL004247 |
| A. aegypti |
AAEL004836 |
| H. sapiens |
ENSP00000348019 |
| A. gambiae |
AGAP006594 |
| P. vanderplanki |
Pv.11410 |