MidgeBase gene description page [Pn.08289]
Outline
| Gene ID | Pn.08289 |
| Type | Protein coding gene |
| Scaffold | PnScaf7968 |
| Start | 34387 |
| End | 34840 |
| Direction | + |
Sequence
Transcript: 249 (bp)
ATGGAAAACGACGCTGGTGAATTCGTTGATCTTTACTGCCCACGAAAATGCTCGGCCAGTAACAGAATAATCCACGCAAAGGACTATGCATCGATCCAAATCAATTTGGTCGACGTTGATGAGAACACTGGACGCATGGTCGGTACAGTTAAGACCTATGCCATTTGCGGAGAAATCAGACGAATGGGCGAGAGCGACGACTGCATCGCTCGTTTGGCAAAGAAGGACGGAGTTCTCTCAAGAAATTAC
Protein: 83 (aa)
MENDAGEFVDLYCPRKCSASNRIIHAKDYASIQINLVDVDENTGRMVGTVKTYAICGEIRRMGESDDCIARLAKKDGVLSRNY
| Type | Start | End | Length |
| CDS |
34387 |
34436 |
50 |
| CDS |
34639 |
34837 |
199 |
| intron |
34437 |
34638 |
202 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACJ50598 |
ribosomal protein S21-like protein [Lutzomyia shannoni] |
1e-35 |
| InterPro |
IPR018279 |
Ribosomal protein S21e, conserved site |
|
| InterPro |
IPR001931 |
Ribosomal protein S21e |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF01249.13 |
Ribosomal protein S21e |
7.6e-41 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC004308 |
| B. mori |
BGIBMGA001363-TA |
| D. plexippus |
DPOGS211671PA |
| C. quinquefasciatus |
CPIJ001119 |
| M. musculus |
ENSMUSG00000039001 |
| P. humanus |
PHUM001040-PA |
| A. aegypti |
AAEL000529 |
| D. melanogaster |
FBgn0015521 |
| H. sapiens |
ENSP00000388332 |
| H. sapiens |
ENSP00000324438 |
| S. invicta |
SI2.2.0_11389 |
| A. aegypti |
AAEL004503 |
| A. mellifera |
GB18769-PA |
| H. melpomene |
HMEL013751-PA |
| A. gambiae |
AGAP009431 |
| H. sapiens |
ENSP00000345957 |
| N. vitripennis |
NV13154-PA |