MidgeBase gene description page [Pn.08288]
Outline
| Gene ID | Pn.08288 |
| Type | Protein coding gene |
| Scaffold | PnScaf7968 |
| Start | 29526 |
| End | 32646 |
| Direction | + |
Sequence
Transcript: 783 (bp)
ATGTCGAAGCCTGAGAACGTTTTAATAATCGATCCGGCTCAAGAGCTGAAGTTTCGAGGCCCATTTACACAGCCCGTTACATCACACATGAGCCTGAAGAATCCAACCGAAAAGAAGATTGCATTCAAGATTAAAACAACAGCTCCCAAAAAATATTGCGTACGCCCAAATTGTGGAGTGGTCGATTCAAAAAGCTCTGTGGAAATTGCAATTTGCCTGCAGCCATTTGTATTCGACCCGAATGAAAAGAACAAGCATAAATTTATGGTACAATCGATGGTTGTTCCCGAGGGTGACATTAATATTGAGCAATTATGGAAAGATGTTAGTCCAGAGCAGTTAATGGATGCAAAACTGCGTTGCACATTTGAAACACCTAATGAGAAAGTTAATGAAAAGAGCAGTGTTAGTCAATTAACAACGCAAATGATTCAAAACGAAACGATTTCCGATACGCAGTTAAAAACAGCCATCACATCTACTGGCGCTGATACTACAAAATTGATTGACGTTGATTACGTTAGAGCAACGACTGAGGTCCGAGAGTTGCGCGAAGAGAACAGCAAAATGCATCAAGAGAATTTGGAACTAAAGGAGCAAATAATTCGTTTGAAGGCATTGGCAGAAAACAACCAAAGGGATACGAGCTCATCGTCATCAGCCAAAATCATTTCAAATCCCTATTCACCACCACAACTTGGACAACAACAAATGCCTATTATCTGGGTTATTGCAGCCGTCGCAATGGCCATTTTTGGCTTAATCCTCGGCAAATTTGTACTC
Protein: 261 (aa)
MSKPENVLIIDPAQELKFRGPFTQPVTSHMSLKNPTEKKIAFKIKTTAPKKYCVRPNCGVVDSKSSVEIAICLQPFVFDPNEKNKHKFMVQSMVVPEGDINIEQLWKDVSPEQLMDAKLRCTFETPNEKVNEKSSVSQLTTQMIQNETISDTQLKTAITSTGADTTKLIDVDYVRATTEVRELREENSKMHQENLELKEQIIRLKALAENNQRDTSSSSSAKIISNPYSPPQLGQQQMPIIWVIAAVAMAIFGLILGKFVL
| Type | Start | End | Length |
| CDS |
29526 |
29583 |
58 |
| CDS |
31759 |
31911 |
153 |
| CDS |
31992 |
32374 |
383 |
| CDS |
32455 |
32643 |
189 |
| intron |
29584 |
31758 |
2175 |
| intron |
31912 |
31991 |
80 |
| intron |
32375 |
32454 |
80 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001656169 |
VAMP-associated protein, putative [Aedes aegypti] gb|EAT45822.1| VAMP-associated protein, putative [Aedes aegypti] |
1e-68 |
| InterPro |
IPR008962 |
PapD-like |
|
| InterPro |
IPR000535 |
Major sperm protein |
|
| InterPro |
IPR016763 |
Vesicle-associated membrane protein |
|
| Gene Ontology(MF) |
GO:0005198 |
structural molecule activity |
|
| Pfam |
PF10226.4 |
Uncharacterized conserved proteins (DUF2216) |
0.018 |
| Pfam |
PF05581.7 |
Vibrio chemotaxis protein N terminus |
0.066 |
| Pfam |
PF07558.6 |
Shugoshin N-terminal coiled-coil region |
0.092 |
| Pfam |
PF06005.7 |
Protein of unknown function (DUF904) |
1.5 |
| Pfam |
PF00635.21 |
MSP (Major sperm protein) domain |
2.9e-33 |
| Pfam |
PF11622.3 |
Protein of unknown function (DUF3251) |
0.35 |
| Pfam |
PF10675.4 |
Protein of unknown function (DUF2489) |
0.02 |
| Pfam |
PF06156.8 |
Protein of unknown function (DUF972) |
1.6 |
| Pfam |
PF01730.11 |
UreF |
0.018 |
| Pfam |
PF04977.10 |
Septum formation initiator |
0.1 |
| Pfam |
PF02183.13 |
Homeobox associated leucine zipper |
0.0095 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM564710-PA |
| B. mori |
BGIBMGA000710-TA |
| A. mellifera |
GB15168-PA |
| H. sapiens |
ENSP00000345656 |
| A. gambiae |
AGAP000626 |
| H. sapiens |
ENSP00000382880 |
| H. melpomene |
HMEL013475-PA |
| D. melanogaster |
FBgn0029687 |
| H. sapiens |
ENSP00000417175 |
| M. musculus |
ENSMUSG00000054455 |
| A. aegypti |
AAEL002936 |
| S. invicta |
SI2.2.0_07134 |
| C. quinquefasciatus |
CPIJ019990 |
| T. castaneum |
TC002864 |
| M. musculus |
ENSMUSG00000024091 |
| N. vitripennis |
NV17903-PA |
| P. vanderplanki |
Pv.10994 |
| D. plexippus |
DPOGS206149PA |