MidgeBase gene description page [Pn.08273]
Outline
| Gene ID | Pn.08273 |
| Type | Protein coding gene |
| Scaffold | PnScaf7960 |
| Start | 15048 |
| End | 56142 |
| Direction | + |
Sequence
Transcript: 2277 (bp)
ATGAAGTTGAATAAGTTGAAAATGTCTTATTTATCGAGTGTCAGTGTGCTGTTCATTTTCCTATTTCTATTGGATAATACGATCGTTCTTGCGGATTATGAGAATACGTTTAGTAGTTATTTCGAGCAGCCGTGCTGCAGCGGACCACATCATCTGAGGCATCATAAAGATCATGTACGAGAATTCACATGTGGAAAGTTATACTACAGAACATTCCATTTAGATGAAGACAGAGATGCGCTTTACGTTGGTGCTATGGATAGAGTGTACAAATTAAACCTTAAAAATGTCACGCTGACGGGATGCGAGAAGGACCACATACTGCTCGATCCGACGGGAAGCGACGTGAGCAATTGCGTTTCGAAGGGCAAGAGCCAGCTCTTCGACTGCCGCAACCACATCCGAGTGATACAATCCATGGAGAATGGCAATCGCTTATACATTTGCGGAACAAACGCTCATAATCCGAAGGATTATGTAATCTATTCCAACCTCACACACTTGCCGAGATCGGAGTTCGTTCCCGGAATTGGTGCGGGAATTGGCAAATGTCCGTATGATCCCGAAGACAACTCGACGGCAATTTATGTTGATCAAGGAAATCCTGGCAATTTTCCTGCATTGTACTCAGGAACGAATGCAGAGTTCACGAAAGCCGACGCCGTCATCTTCCGCTCTGACATCTACAATCTCACATCGGGACGCAAGGAGTTCAACTTCAAGCGAACTTTAAAATACGACTCGAAATGGCTCGACAAGCCGAATTTCGTGGGATCTTTCGACATCGGCGAGTACGTTTACTTCTTCTTCCGCGAGACATCTGTCGAGTACATAAATTGCGGCAAGGCCGTGTACTCGCGTGTCGCCCGCGTCTGCAAGAACGACATCGGCGGCAAGAACATCCTGAGTCAGAACTTTGTCACCTACCTGAAGGCGCGCCTCAACTGCAGCATCTCCGGCGAGTTTCCCTTCTACTTCAACGAGATCCAGTCGGTCTACCAGATCCCCACCGACAAGACCAAGTTCTACGCCACCTTCACCACCAGCACCAACGGCCTCGTCGGCTCCGCCGTCTGCAGCTTCGACATCAAGGAGGTTCACGACGCGTTCAGCGGCAAGTTCAAAGAGCAGGCCAAATCAGACTCCGCATGGCTTCCAGTGCTGAATTCGAAGGTTCCTGAGCCGCGTCCCGGCACCTGCGTGAACGACACATCGAGCCTGCCCGACACCGTGCTCAACTTCATCCGCTCGCATCCGCTGATGGACAAGGCCGTTAATCACGAGCACAACAACCCGGTGTTCTATAAGCGCGATCTCGTGTTCACAAAATTGGTCGTTGACAAAATTTACATAAAAATCCTGAACCAGGAGTATAAGGTCTTCTACATCGGCACCAACACCGGTCGCATCTATAAAATCGTGCAATTTATGCAAAATGGCGATGCGAAATCGACGCTCCTCGACATATTCGAGGTGGCACAGAACGAGCCGATACAGGTGATGCAAATCAGCCAAAAGCGCAAATCACTTTACGTGTCCACAGATCATCGCATCAAGCAAATTGATTTGGCCATGTGCAGTCGCCGCTACGATAGCTGCTTCCGCTGCGTGAAGGATCCATATTGCGGATGGGACAGCGACTCGAACTCGTGCAAGCCGTACGAGCTGGGACTCTTGCAGGACGTGGCCAACGACACGAATGATATATGCGATACAAGTGTTCAGAAGAAGAAAATTGTCGTCACTTACGGACAGAGTGTGCACTTGGGATGTTTCGTTAAAATTCCCGAAGTTCTCAAGGATCAACAAGTCTCGTGGCATCACTACTCGAAGGACAAAGGACGTTATGAGGTGAAATATAGTCCGACGAAATACATCGATACGACGGAGCGCGGTCTCGTGGTGGTTTCTGTCAATGAGGGCGATGCCGGACGTTACGATTGCTATTTGGGCGGCTCGCTCCTGTGCAGCTACAGCATAACGGTGGATGCTCATAGATGTACGCCACCGAACAAGGGCAATGACTATCAGAAAATCTACTCCGACTGGTGTCACGAATTCGAGAAATACAAATCGGCCATGAAAACGTGGGAGAAGAAGCAAGCTGAGGAAGAGGAGGCGGAGGAGGAGACTTTCCTCTCTGTCCCGATTTTTGTGAGCATCAATGCTCAGCGAAACAAAACTTTAGTAATCAGCATCCTAATGAAGTATTCAACAGAAACTCAAACAACAATGTCTGATGAGATGACTCATCCGATGACTCACGACAACTTTCTC
Protein: 759 (aa)
MKLNKLKMSYLSSVSVLFIFLFLLDNTIVLADYENTFSSYFEQPCCSGPHHLRHHKDHVREFTCGKLYYRTFHLDEDRDALYVGAMDRVYKLNLKNVTLTGCEKDHILLDPTGSDVSNCVSKGKSQLFDCRNHIRVIQSMENGNRLYICGTNAHNPKDYVIYSNLTHLPRSEFVPGIGAGIGKCPYDPEDNSTAIYVDQGNPGNFPALYSGTNAEFTKADAVIFRSDIYNLTSGRKEFNFKRTLKYDSKWLDKPNFVGSFDIGEYVYFFFRETSVEYINCGKAVYSRVARVCKNDIGGKNILSQNFVTYLKARLNCSISGEFPFYFNEIQSVYQIPTDKTKFYATFTTSTNGLVGSAVCSFDIKEVHDAFSGKFKEQAKSDSAWLPVLNSKVPEPRPGTCVNDTSSLPDTVLNFIRSHPLMDKAVNHEHNNPVFYKRDLVFTKLVVDKIYIKILNQEYKVFYIGTNTGRIYKIVQFMQNGDAKSTLLDIFEVAQNEPIQVMQISQKRKSLYVSTDHRIKQIDLAMCSRRYDSCFRCVKDPYCGWDSDSNSCKPYELGLLQDVANDTNDICDTSVQKKKIVVTYGQSVHLGCFVKIPEVLKDQQVSWHHYSKDKGRYEVKYSPTKYIDTTERGLVVVSVNEGDAGRYDCYLGGSLLCSYSITVDAHRCTPPNKGNDYQKIYSDWCHEFEKYKSAMKTWEKKQAEEEEAEEETFLSVPIFVSINAQRNKTLVISILMKYSTETQTTMSDEMTHPMTHDNFL
| Type | Start | End | Length |
| CDS |
15048 |
15216 |
169 |
| CDS |
25610 |
25697 |
88 |
| CDS |
29807 |
29858 |
52 |
| CDS |
38490 |
38558 |
69 |
| CDS |
38733 |
38840 |
108 |
| CDS |
39591 |
39728 |
138 |
| CDS |
41081 |
41213 |
133 |
| CDS |
42153 |
42509 |
357 |
| CDS |
43855 |
44083 |
229 |
| CDS |
48786 |
49122 |
337 |
| CDS |
50677 |
50840 |
164 |
| CDS |
51200 |
51352 |
153 |
| CDS |
51726 |
51834 |
109 |
| CDS |
52394 |
52449 |
56 |
| CDS |
55600 |
55681 |
82 |
| CDS |
56107 |
56139 |
33 |
| intron |
15217 |
25609 |
10393 |
| intron |
25698 |
29806 |
4109 |
| intron |
29859 |
38489 |
8631 |
| intron |
38559 |
38732 |
174 |
| intron |
38841 |
39590 |
750 |
| intron |
39729 |
41080 |
1352 |
| intron |
41214 |
42152 |
939 |
| intron |
42510 |
43854 |
1345 |
| intron |
44084 |
48785 |
4702 |
| intron |
49123 |
50676 |
1554 |
| intron |
50841 |
51199 |
359 |
| intron |
51353 |
51725 |
373 |
| intron |
51835 |
52393 |
559 |
| intron |
52450 |
55599 |
3150 |
| intron |
55682 |
56106 |
425 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_316666 |
AGAP006634-PA [Anopheles gambiae str. PEST] gb|EAA11400.4| AGAP006634-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR007110 |
Immunoglobulin-like |
|
| InterPro |
IPR013783 |
Immunoglobulin-like fold |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR002165 |
Plexin |
|
| InterPro |
IPR003599 |
Immunoglobulin subtype |
|
| InterPro |
IPR016201 |
Plexin-like fold |
|
| InterPro |
IPR001627 |
Semaphorin/CD100 antigen |
|
| Gene Ontology(BP) |
GO:0007275 |
multicellular organismal development |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0004872 |
receptor activity |
|
| Pfam |
PF01403.14 |
Sema domain |
9.6e-135 |
| Pfam |
PF07679.11 |
Immunoglobulin I-set domain |
0.0016 |
| Pfam |
PF13895.1 |
Immunoglobulin domain |
0.011 |
| Pfam |
PF01437.20 |
Plexin repeat |
0.00014 |
| Pfam |
PF10310.4 |
Protein of unknown function (DUF2413) |
0.055 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC001219 |
| A. aegypti |
AAEL013589 |
| P. vanderplanki |
Pv.08232 |
| H. melpomene |
HMEL004818-PA |
| P. vanderplanki |
Pv.06722 |
| B. mori |
BGIBMGA008512-TA |
| H. melpomene |
HMEL012023-PA |
| A. gambiae |
AGAP006636 |
| C. quinquefasciatus |
CPIJ017234 |
| B. mori |
BGIBMGA000941-TA |
| N. vitripennis |
NV17440-PA |
| S. invicta |
SI2.2.0_06809 |
| D. plexippus |
DPOGS206619PA |
| D. melanogaster |
FBgn0011260 |
| D. plexippus |
DPOGS216011PA |
| A. gambiae |
AGAP006634 |
| A. aegypti |
AAEL005993 |
| A. mellifera |
GB16014-PA |
| D. melanogaster |
FBgn0264273 |
| B. mori |
BGIBMGA008511-TA |
| P. humanus |
PHUM307950-PA |