MidgeBase gene description page [Pn.08270]
Outline
| Gene ID | Pn.08270 |
| Type | Protein coding gene |
| Scaffold | PnScaf7953 |
| Start | 678 |
| End | 4048 |
| Direction | + |
Sequence
Transcript: 2472 (bp)
ATGAACAGAAAGGCAGTCGAAATCGAAAATGAAGCTGCTCTGCAGCAGTTTGCACCGGCGGGCGTTCGAGTGAATGCATCAGCCAATCTCATCGCAAAGCTCGCATCGAATGACGACAAAGCCAGCGATGAGGAAATTTCAGTGATCGCCGAGTACTTGCTGGCTGTCAACGGGCGGCGTCGTTCCGAGGAGTTTGCTCTCGCGACATCACTCGACGCTCTAAAGCCCGCACTGGCCAGAGTCCAAGCCGACTTTTTCGCGATTTTCAAGGCAACGCCGTCGTCCCACTGGACAGTCATGGCCATTTCCAGGTCGAGCTACTCGACCATCGTCTATCTCATGAATCCCTTCGGCGACCTCCCGATCGCCTCAATCCAGACGATTCTCGACGAAGCTTTCGGCTTGACGACCGTCCGGCTCAACGGCGGTCGCTCAAACGACCCGAATCTCGACGAGTTTCTCGCGCTCGCGCACCTCGAGACGATGCTGACACGGAATTTGAGCGGAATCGACAGCTTTGGCGTCGCATCGAGAGCCGACGTGGCGCGGTTGAAGGCGAGGCTGAAGGAGTCGTTCCTCAAGAACGTCTACGGTAGCGCCATGAGCGACGCGAGCGGAAACGCCGAGTTTAGGGCGAGACTGCGCGATTTCCTCGACCAGTGCGGCGAGTTCTCGGAGCTGTCGGTCCTCGCCCTCAAGTACCGCGACACGCTGGCGAGGGAGGCGAAAAATCTCGAAATTGAAGGCGCCGCGGGCGAGGAAGCGCGGCGGCGAATCGAAGCCGCGCGCAACGAGTTCACCAGGAGTGAGAAGGTCGCGACGCTGGAGAGTGTGGAGGTTGAGGGCGATGGTGCGAGGCTGAAGATCGAGCGCGACTTTCCCAAAGAAATGGCGACCTTCCGGAGCTTCATGGACGTGCTGAAAAATGCTGACGACAAGATCAACAACGAGCTGCGCGAATATTCCGCCAAAATCGGCTACGACCTTGAGAAGCTGAAGCGGTTTTTTGCCCTTCAAAAGCTCAGCGTTTCATCCGAGTCGCAGCCGGTAACACCGCGCCGTTCGATTCCGACCGCGATAATCAAAACGGTCGCACCCGAGCCGTCGGCAACGGAAGACGAGGCGGGCGTGAAGTCGGTGGAGGAGCTGCTGGCTGAGATGAGCATGGAGGACTCGGACGAGTCGAACGACGCCGCAGTGATCGCTGGGCTGCGGGCCGACTTCGCGCAGTTCCGCCGGCACACGATGACGTGGCAGTCGCGGTCGGTCGCCGAGATCCGCAGCTGGTCCGAGTCGATGCGCGGCCGCTTGAAGCGCTCGCAGGTGCCCGAGGCCATGGCCGTCCTCAACCGGGCCAACACGCTCGTCAAGGGCTGGCGGTCACTGCGGGACGCGCAAGTGCTGCCGGTGCTCGCGTACTTCTACCGCAAGGACAACCACGGCGCCTTCTACGAGATCCTCACCGGCGAGGGAAAGACCGTCATTGTGGCGCTCATGGCCGTGCTGAAGGTCCTCATGGGCGAGAAGTTCGTCGACGTCGTGACGTCCAACTCGGTGCTCGCGCAAGATGGCGTCGACGATCGGCGCGAGTTCTATGCCGTGTTCGACATCAGCGTCGACACCAACAACTACCGCAAGGACTACAAGCGTGGCGCGAAGGCATGCTACGCTGCCGACGTCGTCTACGGCACGATGGGGAACTTTCAAGGCGACTACTTGCGGCACGAGTTCGAGAGGCTCGAAACACGCGGCGACCGCGACTTCGGTTGCCTCATTCTCGACGAGGTCGACAGCATCCTGCTCGACAATGGCGGGCACATCACGAAGCTCGCGACGCCCTTTCCCGGCATGGACTGCCTCAAGTACGTCTACATCCGGATCTGGCAGGCGCTGCTGAAAGTCGAGCGCGAAATGCCGGCCAAATTTCAGGCCAGCCTGGAGGCGAGGACTCTCGAGCTGCAGAGCGACGCGGCCAAGGACGAAGAGCTTCAAAAATTTGCCGAAGAATTTCTCGCGAATTCGCGAAGTTTCATCGTAAATGCGATCAAAGCGACAAACCCCGCGGACATTCCCCTCATTCCCCCTCACCTGCGGCAATTTGCGAAAGACGCGCTCGAAAAGTGGATCGCGAGCGCAATTTACGCGCGCTTCCAATGCCACGAGGACGTCCATTACGTGATCCGGAAAAACGAGGCGGGCGAGGCCTCCATCGTGCCCGTCGACTACCAAAACACCGGCGTCGCGCTCCAAAACACCGTCTGGTCCGAGGGCCTGCACCAGTTCGTGCAGCTCAAGCACAACCTGAGCATGTCGACCGAGACCCTCACCAGCTCCTTCGTCTCGAACATCGGCTACGTCCGGCTCTACCGCAACAACCTCATCGGCATGACCGGTGCGTGCATTTTTTGTCCTAATAAGGATGAAAATGAGCGAAAATTTTACTGGCTTTTGTGCTTTTTACAATTTTTTTCT
Protein: 824 (aa)
MNRKAVEIENEAALQQFAPAGVRVNASANLIAKLASNDDKASDEEISVIAEYLLAVNGRRRSEEFALATSLDALKPALARVQADFFAIFKATPSSHWTVMAISRSSYSTIVYLMNPFGDLPIASIQTILDEAFGLTTVRLNGGRSNDPNLDEFLALAHLETMLTRNLSGIDSFGVASRADVARLKARLKESFLKNVYGSAMSDASGNAEFRARLRDFLDQCGEFSELSVLALKYRDTLAREAKNLEIEGAAGEEARRRIEAARNEFTRSEKVATLESVEVEGDGARLKIERDFPKEMATFRSFMDVLKNADDKINNELREYSAKIGYDLEKLKRFFALQKLSVSSESQPVTPRRSIPTAIIKTVAPEPSATEDEAGVKSVEELLAEMSMEDSDESNDAAVIAGLRADFAQFRRHTMTWQSRSVAEIRSWSESMRGRLKRSQVPEAMAVLNRANTLVKGWRSLRDAQVLPVLAYFYRKDNHGAFYEILTGEGKTVIVALMAVLKVLMGEKFVDVVTSNSVLAQDGVDDRREFYAVFDISVDTNNYRKDYKRGAKACYAADVVYGTMGNFQGDYLRHEFERLETRGDRDFGCLILDEVDSILLDNGGHITKLATPFPGMDCLKYVYIRIWQALLKVEREMPAKFQASLEARTLELQSDAAKDEELQKFAEEFLANSRSFIVNAIKATNPADIPLIPPHLRQFAKDALEKWIASAIYARFQCHEDVHYVIRKNEAGEASIVPVDYQNTGVALQNTVWSEGLHQFVQLKHNLSMSTETLTSSFVSNIGYVRLYRNNLIGMTGACIFCPNKDENERKFYWLLCFLQFFS
| Type | Start | End | Length |
| CDS |
678 |
875 |
198 |
| CDS |
1324 |
2152 |
829 |
| CDS |
2427 |
3107 |
681 |
| CDS |
3282 |
4045 |
764 |
| intron |
876 |
1323 |
448 |
| intron |
2153 |
2426 |
274 |
| intron |
3108 |
3281 |
174 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFA09123 |
hypothetical protein TcasGA2_TC015984 [Tribolium castaneum] |
1e-117 |
| InterPro |
IPR011130 |
SecA preprotein, cross-linking domain |
|
| InterPro |
IPR011115 |
SecA DEAD-like, N-terminal |
|
| InterPro |
IPR014018 |
SecA motor DEAD |
|
| InterPro |
IPR000185 |
SecA protein |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0006605 |
protein targeting |
|
| Gene Ontology(BP) |
GO:0017038 |
protein import |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Pfam |
PF07517.9 |
SecA DEAD-like domain |
4.9e-59 |
| Pfam |
PF00270.24 |
DEAD/DEAH box helicase |
2.5e-05 |
| Pfam |
PF01043.15 |
SecA preprotein cross-linking domain |
3.7e-06 |
| Pfam |
PF01420.14 |
Type I restriction modification DNA specificity domain |
0.059 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
0.067 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.14106 |
| Pn.08110 |
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV25445-PA |
| A. gambiae |
AGAP011982 |
| T. castaneum |
TC015984 |
| C. quinquefasciatus |
CPIJ015813 |
| A. gambiae |
AGAP008714 |
| A. aegypti |
AAEL012505 |
| B. mori |
BGIBMGA009572-TA |
| N. vitripennis |
NV31091-PA |
| P. vanderplanki |
Pv.17177 |
| C. quinquefasciatus |
CPIJ018005 |
| T. castaneum |
TC015405 |