MidgeBase gene description page [Pn.08261]
Outline
| Gene ID | Pn.08261 |
| Type | Protein coding gene |
| Scaffold | PnScaf7928 |
| Start | 6933 |
| End | 11319 |
| Direction | - |
Sequence
Transcript: 990 (bp)
ATGGAAGTTTTCTTTCAAATGATCGCCAATGTAGTCTTTAACACACTCGTGCCATTGTACTTACTCGCCTTGGTCGGAGCATGGGCTCTCCTGTGGTGGTCGTACGAGAACTTCAAATCAGTGATACAAATAATAAAGAGCGTGCTCACGCCATACTTTCAGCCCAGTGAAAATAAGGGCTTTGTGGAGAAGTTCGGGAAATGGGCAGTGATTACGGGAGCAACGGATGGCATTGGGAAGCAGTACGCGAAGGAGCTCGCCAAGCACGGCATGAACATCGTTCTGATATCGAGAACCGAGTCGAAGCTCGTCGAGGTGGCGAAGGAAATCGAGTCAACGTACCCGGTGAAGACGAAGTGCATCGCCGCTGATTTCGGCAGCGGCAAGGAGATCTACGAGGGCATCAAGCGCGAGCTGCAGCCGCTGGACATTGGCGTGCTCGTCAACAATGTCGGTCGCATGTACGACTTCCCCGACGACCTCGACCACATCTCGGAGGAGCTGCTGTGGCAGATCATCAACATCAACGTCGGCGCAGTGACGATGATGACGCGCATCCTCATACCGCAGATGAAGCTCAACCAGCGCGGCATCATCGTCAACATCTCCTCCGGGTCCGAGTGCCAGCCGACGCCGCTCATGACTGTCTATGCGTCGACGAAAGTCTACGTCAAGAACTTCACGCTAGCTCTCAGCAAAGAGCTCGAGGAGCACAACGTGCAAGTGCAGCTGGTGACGCCGATGTTTGTGCAGACGAAAATGAACAACTACTCGACATCTGTGATGAAGGGAAGCATCTTGGTGCCCGACGTTGAGTCCTACACACGGTCGGCCGTCTTCACGCTGGGCAAGAGCTCTCAAACCAACGGCTATTGGAGTCACGGACTTCAATATGGCTGCATGAAGCTCGTGCCTTCATTCATTAGGACGTGTGTGTCGTTCAGGATGAACAAAAAATTCCGCGACGAGTATTACGCTCAGCAGACCATC
Protein: 330 (aa)
MEVFFQMIANVVFNTLVPLYLLALVGAWALLWWSYENFKSVIQIIKSVLTPYFQPSENKGFVEKFGKWAVITGATDGIGKQYAKELAKHGMNIVLISRTESKLVEVAKEIESTYPVKTKCIAADFGSGKEIYEGIKRELQPLDIGVLVNNVGRMYDFPDDLDHISEELLWQIININVGAVTMMTRILIPQMKLNQRGIIVNISSGSECQPTPLMTVYASTKVYVKNFTLALSKELEEHNVQVQLVTPMFVQTKMNNYSTSVMKGSILVPDVESYTRSAVFTLGKSSQTNGYWSHGLQYGCMKLVPSFIRTCVSFRMNKKFRDEYYAQQTI
| Type | Start | End | Length |
| CDS |
6936 |
7034 |
99 |
| CDS |
7095 |
7297 |
203 |
| CDS |
7439 |
7795 |
357 |
| CDS |
7860 |
7982 |
123 |
| CDS |
11112 |
11319 |
208 |
| intron |
7035 |
7094 |
60 |
| intron |
7298 |
7438 |
141 |
| intron |
7796 |
7859 |
64 |
| intron |
7983 |
11111 |
3129 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002002062 |
GI17177 [Drosophila mojavensis] gb|EDW11504.1| GI17177 [Drosophila mojavensis] |
1e-104 |
| InterPro |
IPR020904 |
Short-chain dehydrogenase/reductase, conserved site |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
4e-11 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
2.1e-05 |
| Pfam |
PF03807.12 |
NADP oxidoreductase coenzyme F420-dependent |
0.052 |
| Pfam |
PF08643.5 |
Fungal family of unknown function (DUF1776) |
0.056 |
| Pfam |
PF01488.15 |
Shikimate / quinate 5-dehydrogenase |
0.032 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
1.1e-23 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.0012 |
| Pfam |
PF08659.5 |
KR domain |
0.00026 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000034189 |
| P. humanus |
PHUM004100-PA |
| H. sapiens |
ENSP00000407437 |
| D. melanogaster |
FBgn0032614 |
| H. melpomene |
HMEL012846-PA |
| P. vanderplanki |
Pv.16732 |
| A. aegypti |
AAEL011193 |
| A. gambiae |
AGAP008570 |
| D. melanogaster |
FBgn0051810 |
| P. vanderplanki |
Pv.16734 |
| N. vitripennis |
NV15279-PA |
| P. humanus |
PHUM286730-PA |
| C. quinquefasciatus |
CPIJ007736 |
| A. mellifera |
GB11263-PA |
| D. plexippus |
DPOGS201874PA |
| H. sapiens |
ENSP00000219439 |
| B. mori |
BGIBMGA006048-TA |
| T. castaneum |
TC014627 |
| D. melanogaster |
FBgn0051809 |
| S. invicta |
SI2.2.0_06952 |