MidgeBase gene description page [Pn.08247]
Outline
| Gene ID | Pn.08247 |
| Type | Protein coding gene |
| Scaffold | PnScaf7889 |
| Start | 33518 |
| End | 42077 |
| Direction | - |
Sequence
Transcript: 2733 (bp)
ATGAAACGAAAGCCTGAAGTCACCATTTAAAGAAAAAAACTCAACGACAGTGCCACAAATCACTCACAGACCATGTATCGATACTCAATATACCTTTTTGCTGCGGCGCTGATAAGCATGCTGGTGCTCGCAAGCGCACAGTTTGGCGTCGATAAGGCGCCCACCACTCAGAATCCCTGCACGAGTAAGACGACGTGCAGCGACTGCATTCAGACGTCAAAGTGCGCCTGGTGCATGCAACCCGACTTCGGCGACCGTCCGCGGTGCTTCCAGCCCGACATCAAGCAAGCGACCACCTGTCTCGAGGAGTTCATTGTGAACCCCGACAACGAGGAATTCATGATCAGAAACTGGGCGCTGAGTAGAGGCGAAGGCCAGTATTTGGGCGGTGGCGGAATGGTCAGCGGCGGCAGTTACGAGGCAGAGGGTTACGAGTCAGGATCGATGTCGGGCCACGGATCGGCCTCAGGCGGTGGCTCTGCCTCTGGCGGATCTTCCGGAAGCGGCCACTCGGGAGTCGTTCAAGTCAGCCCACAGCACGTGAATTTGCGGCTGAGAGTCAACGAAAAGCACAGCCTGAAGATGAGCTACGCTCAGGCCGAAGACTACCCGGTAGATCTCTACTACCTCATGGACCTCTCAAAATCTATGGAGGACGACAAGGCGAAGCTCTCGAAGCTCGGAAATTTGCTCGCGGAAACTATGCAGAACATCACGAAGAACTTCCAACTCGGCTTCGGCTCGTTCGTCGACAAGGTCCTCATGCCCTACGTCTCGACCGTTCCCAAGAAATTACAGACGCCATGTACCGACTGCGAAGCGCCTTACGGCTTTAAGAATGTCATGACACTTAGTAACAACACAACGTCCTTTGCTACGTTTATCGGTTGTCGGCATCACTGTTCGATTTTGCGAGAACCATGTCAAAATTGCGCAGCCCCATACGGATATCATAATGTCATGGCACTCAGCTCTGACACAAGACGATTTGCTTACAACGTGGAGAAAGCGCAAGTGTCGGGAAATCTGGACGCACCCGAGGGAGGTTTCGACGCCATCATGCAGGCCATTGTGTGTAAGGAGCAAATCGGCTGGCGCAATCAGTCTCGTCGCTTGCTTGTCTTCTCAACAGACGCCGGATTTCACTACGCCGGTGACGGCAAACTCGGCGGTGTCATTACGCCAAACGACGGCGAATGTCACATGTACAACAACGAGTACACTCACTCAACGATCCAGGACTATCCGAGCATCTCGCAAATCAATCTGAAGGTCAAGGAGAACGCCATCAACATTATTTTTGCTGTTACGCAGGCGCAGCACGAGGTCTACAGCAAACTCTCGAAGCACGTCGAGGGCTCATCGAGTGCCGTCCTCTCGGAGGATTCCTCAAACATCGTCGACCTCGTTCGCGAGGAGTACAATAAAATTACGTCGGCAGTCGAGATGAAGGACACGGCACAGGGCTCGGTGAAGGTCACTTACTACTCGTACTGCAAAGGCACCACGCGAATGCAGACAAACAAGTGCGATGGACTTCGCGTCGGCGACGTTGTAGCCTTCGAAACGGAAATTGTCGTCACCTCGTGCCCGGCCAATCCAAACGAGCGCCATCAACAGTTCCAAATCTACCCGGTCGGTGTCGGCGAGGCGCTGACGATCGACCTCGACATGATTTGCTCGTGCGACTGCGAGACAAGCGGACCAACGTTTGAACCCAACTCGGAGCTGTGCAAAGGCCACGGAACACTGTCGTGCGGCATCTGCGACTGTTACGACGACTTTTTCGGACGCAACTGTGAGTGCAACAGCAAGGAACTCAGCGAAACGACACGCGACTTCTTCAAGTGCCGTCCTGACAACACCACCGACGTCGACTGCAGCGGCAGAGGAACGTGCGTTTGCGGCCAGTGCCACTGCAATCAGCGCGACAACTTCGAAGAGAAAATCTACGGGTCGTTCTGCGAGTGCGACAACTACTCGTGCGACCGCAACGACGGCCTGCTGTGCTCGGGCCACGGAACGTGCTCGTGCGGGCAGTGCGTGTGCGACGAGGGCTGGATTTCGAAGAAGGACAACATAAATGCGTGCGACTGCGACACCTCGGAGGACAAGTGTCGGGCGTCCAGCAGCGACGAGGTCTGCTCGGGTCACGGAAAGTGCAACTGTGGAAAGTGCGAGTGTGAAGCCACGGGAGATGTTCGATACTCGGGAGCGTTCTGCGAGAGATGTCCAACTTGCCCGGGACGTTGCGACGAGTTGAGGGCTTGCGTCGAGTGCCAAATGTACAAGAAGGGACCGCTGAAGGATGGCGAAGACTGCGCCAACAACTGCACGCTCTTCGTGCCGATCTCGGAGGAAACTGTCGTCTATGACGAGGATAGAGACTCGCATCTTTGCACGTTCTACGACGAGGACGACTGTCGCTATCGCTTCACGTACGAGGAGATCGTTCACAAGAACGGAACCACCGAAGTTAGGGTCAGGGCGCAGCAAACGCCAGAGTGTCCGCCAAAGGTTTTCCTGCTCGGCATCATCATTGGTGTGATTGCCGCAATCGTGCTGATCGGTCTCGCAATTCTCATGATCTGGAAACTCCTTACAACGATTCACGACAAGCGCGAGTTTGCGCGCTTCGAGAAGGAGCGAATGATGGCGAAGTGGGACACTGGTGAAAATCCGATCTACAAGCAAGCGACGTCGACATTCAAGAATCCAACGTATGCAGGAAAG
Protein: 911 (aa)
MKRKPEVTIXRKKLNDSATNHSQTMYRYSIYLFAAALISMLVLASAQFGVDKAPTTQNPCTSKTTCSDCIQTSKCAWCMQPDFGDRPRCFQPDIKQATTCLEEFIVNPDNEEFMIRNWALSRGEGQYLGGGGMVSGGSYEAEGYESGSMSGHGSASGGGSASGGSSGSGHSGVVQVSPQHVNLRLRVNEKHSLKMSYAQAEDYPVDLYYLMDLSKSMEDDKAKLSKLGNLLAETMQNITKNFQLGFGSFVDKVLMPYVSTVPKKLQTPCTDCEAPYGFKNVMTLSNNTTSFATFIGCRHHCSILREPCQNCAAPYGYHNVMALSSDTRRFAYNVEKAQVSGNLDAPEGGFDAIMQAIVCKEQIGWRNQSRRLLVFSTDAGFHYAGDGKLGGVITPNDGECHMYNNEYTHSTIQDYPSISQINLKVKENAINIIFAVTQAQHEVYSKLSKHVEGSSSAVLSEDSSNIVDLVREEYNKITSAVEMKDTAQGSVKVTYYSYCKGTTRMQTNKCDGLRVGDVVAFETEIVVTSCPANPNERHQQFQIYPVGVGEALTIDLDMICSCDCETSGPTFEPNSELCKGHGTLSCGICDCYDDFFGRNCECNSKELSETTRDFFKCRPDNTTDVDCSGRGTCVCGQCHCNQRDNFEEKIYGSFCECDNYSCDRNDGLLCSGHGTCSCGQCVCDEGWISKKDNINACDCDTSEDKCRASSSDEVCSGHGKCNCGKCECEATGDVRYSGAFCERCPTCPGRCDELRACVECQMYKKGPLKDGEDCANNCTLFVPISEETVVYDEDRDSHLCTFYDEDDCRYRFTYEEIVHKNGTTEVRVRAQQTPECPPKVFLLGIIIGVIAAIVLIGLAILMIWKLLTTIHDKREFARFEKERMMAKWDTGENPIYKQATSTFKNPTYAGK
| Type | Start | End | Length |
| CDS |
33521 |
33583 |
63 |
| CDS |
33651 |
33839 |
189 |
| CDS |
33906 |
34015 |
110 |
| CDS |
34085 |
35030 |
946 |
| CDS |
35094 |
35525 |
432 |
| CDS |
36164 |
36248 |
85 |
| CDS |
36977 |
37008 |
32 |
| CDS |
37328 |
37412 |
85 |
| CDS |
37574 |
37802 |
229 |
| CDS |
37932 |
38465 |
534 |
| CDS |
42050 |
42077 |
28 |
| intron |
33584 |
33650 |
67 |
| intron |
33840 |
33905 |
66 |
| intron |
34016 |
34084 |
69 |
| intron |
35031 |
35093 |
63 |
| intron |
35526 |
36163 |
638 |
| intron |
36249 |
36976 |
728 |
| intron |
37009 |
37327 |
319 |
| intron |
37413 |
37573 |
161 |
| intron |
37803 |
37931 |
129 |
| intron |
38466 |
42049 |
3584 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001992515 |
GH24161 [Drosophila grimshawi] gb|EDV92222.1| GH24161 [Drosophila grimshawi] |
0.0 |
| InterPro |
IPR013111 |
EGF, extracellular |
|
| InterPro |
IPR002369 |
Integrin beta subunit, N-terminal |
|
| InterPro |
IPR016201 |
Plexin-like fold |
|
| InterPro |
IPR012896 |
Integrin beta subunit, tail |
|
| InterPro |
IPR015812 |
Integrin beta subunit |
|
| InterPro |
IPR014836 |
Integrin beta subunit, cytoplasmic |
|
| Gene Ontology(BP) |
GO:0007160 |
cell-matrix adhesion |
|
| Gene Ontology(BP) |
GO:0007155 |
cell adhesion |
|
| Gene Ontology(BP) |
GO:0007275 |
multicellular organismal development |
|
| Gene Ontology(BP) |
GO:0007229 |
integrin-mediated signaling pathway |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0008305 |
integrin complex |
|
| Gene Ontology(MF) |
GO:0004872 |
receptor activity |
|
| Gene Ontology(MF) |
GO:0005102 |
receptor binding |
|
| Pfam |
PF11234.3 |
Protein of unknown function (DUF3036) |
0.024 |
| Pfam |
PF07965.7 |
Integrin beta tail domain |
3.7e-17 |
| Pfam |
PF07974.8 |
EGF-like domain |
2.7e-10 |
| Pfam |
PF00362.13 |
Integrin, beta chain |
1.3e-169 |
| Pfam |
PF05808.6 |
Podoplanin |
0.056 |
| Pfam |
PF08725.6 |
Integrin beta cytoplasmic domain |
2.9e-26 |
| Pfam |
PF04360.7 |
Serglycin |
0.022 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000303351 |
| P. humanus |
PHUM579210-PA |
| D. melanogaster |
FBgn0004657 |
| N. vitripennis |
NV13509-PA |
| A. mellifera |
GB19541-PA |
| H. sapiens |
ENSP00000388694 |
| H. sapiens |
ENSP00000317697 |
| H. sapiens |
ENSP00000380955 |
| T. castaneum |
TC011707 |
| H. sapiens |
ENSP00000283249 |
| N. vitripennis |
NV10882-PA |
| C. quinquefasciatus |
CPIJ006947 |
| H. sapiens |
ENSP00000262017 |
| H. sapiens |
ENSP00000347279 |
| H. sapiens |
ENSP00000380952 |
| M. musculus |
ENSMUSG00000000157 |
| M. musculus |
ENSMUSG00000022817 |
| H. sapiens |
ENSP00000455374 |
| H. sapiens |
ENSP00000386367 |
| A. mellifera |
GB12005-PA |
| H. melpomene |
HMEL005744-PA |
| C. quinquefasciatus |
CPIJ006690 |
| H. sapiens |
ENSP00000408741 |
| M. musculus |
ENSMUSG00000020689 |
| H. sapiens |
ENSP00000407801 |
| T. castaneum |
TC013706 |
| H. sapiens |
ENSP00000418367 |
| H. sapiens |
ENSP00000380948 |
| D. plexippus |
DPOGS205083PA |
| H. sapiens |
ENSP00000364094 |
| H. sapiens |
ENSP00000386828 |
| H. sapiens |
ENSP00000267082 |
| H. sapiens |
ENSP00000379350 |
| A. aegypti |
AAEL012466 |
| S. invicta |
SI2.2.0_04656 |
| H. sapiens |
ENSP00000380950 |
| P. vanderplanki |
Pv.00858 |
| P. humanus |
PHUM147280-PA |
| H. sapiens |
ENSP00000452786 |
| M. musculus |
ENSMUSG00000026971 |
| H. sapiens |
ENSP00000303242 |
| S. invicta |
SI2.2.0_05322 |
| H. sapiens |
ENSP00000456711 |
| H. sapiens |
ENSP00000296181 |
| H. sapiens |
ENSP00000345501 |
| B. mori |
BGIBMGA006878-TA |
| H. sapiens |
ENSP00000461626 |
| H. sapiens |
ENSP00000408024 |
| H. sapiens |
ENSP00000437375 |
| A. gambiae |
AGAP000815 |
| H. sapiens |
ENSP00000420814 |
| N. vitripennis |
NV18374-PA |