MidgeBase gene description page [Pn.08241]
Outline
| Gene ID | Pn.08241 |
| Type | Protein coding gene |
| Scaffold | PnScaf7887 |
| Start | 77803 |
| End | 80575 |
| Direction | - |
Sequence
Transcript: 2703 (bp)
ATGAGTCGAATTTTTCAACAAAATCGCGCTTTAGGCTACGTATCAAATCAAGTACCAGCTACAGTCCGGTATGTAGCGGGCAGAAGAGAAAATTGTGTATCGACTTGCGTCGGAAAGTCGTTTCAAACGTTCGGCTGCAATCATTTTCGATTGCTGACAGTCTCCGGTCTTCATCCGGATGAAATTTCGTGTTTAGCAAGCGACAAATACCTCGTTTATTCTGCGTGCGGCCAAATAATCTTCGGTTGGAGACGAGGAAATGAAATCAAGCACAAATACATCGGCCACAAGTCAAAAGTTGTGCACCTACTGCCATTCGGTCGGCACTTGATTTCCGTCGACGAGGACAGCCTGCTCAAGGTCTGGGAGCGAAAATGCGAGACGGTCTTTCTTGAAATCCCCTTCCAGAACGATACATTCAAAATATCGGCCGTCATGCACCCGCAGACCTACATCAACAAAATTCTCGTGGGCAGCGAGCAAGGCGCTCTGCAGCTGTGGAATATTCGACACGGAAAGCTCATCCACGCATTCAGCGGCTTTGGCAGCAAAGTGACCGTGTTGGAACAAGCACCAGCAGTCGATGTTGTCGGCGTGGGACTGGCAAACGGGAAAATTATTCTCCTCAACTTGAAGGTCGACAAAGTCATCATGGAGTTCACGCAAGAGTGGGGAGCCGTCACCGGCATTTCCTTCCGAACAGACGGACCGACGCATATGGCGACATCGAGCAACAACGGTCAGATTGCTTTCTGGGACTTGGACGAGAAGAAAGTCATTGGCACGCTCCTGGCTCATCATGACAGCGTCAACACTCTCAAATTTCTTCCAAACGAACCGCTTTTGCTGACAACATCAGTCGACAACTCATTGAAGCTCTGGATCTTCGACAAACTGGACGGAACACCGCGCTTGCTGCGCTACAGAGAAGGTCACTCTGCACCACCGCTTTCCATTCGCTATCATGGCCAGAAAGGCGACAGCATTCTTTCCTCGGGCGAAGACTCGTCGCTGAGAATTTTCAGCACAATTTCTGAGACGTTGAACGTGAGCTTGGGCCGAGCCAGCTACAATAGAAAGGCGTCGAAGAAGATTTCAAAAATGCAAGAAGACTACAGAATCATGCCACCGATTTGCGGCTTCACGTCGGAAACGACGCGTGAAAAACACTGGGACAGCATCGTAGCGATTCACAAAAATCTCGTCGAGGCAACGACTTGGTCGTTCGACAAGCGAAAGATGGGAGAGCTGAAGCTTCTGCCGGCGAAGTTCAAGGACAGCAAACGAAGCGATTTCAAGACCTACGCAACGTGTCTTAACATGACACACTGCGGAAACTTCGTCATCATTGGCTACTCGTCGGGCGACGTTGAGCGTTACAACATCCAGTCGGGCCTTCATCGAGCGAGCTACGGCGAGCCTGCTCACGAGAGCGACGTTCGCGGCGTTTGGGCCGACAATCTGAACCAGCTGGTTATCAGTGCTGGCGCAGACTTTAAGCTCAAATTCTGGCATTTCAAATCAAAGGCGGCGTTCGGAGAGATGAAAATGCAGGACAGCATTCTCTTCATCCAAGGACACCGCGAGAGCTCCATGCTCTGCGTCGCTCTCGAGGACTTCACGGTTCTCATTGTCGACTACGAGACGAAAAATATTGTGAGGAAATTCGTCGGCCACACGGCTCCAATCACCGACGCATGCTTCAGTCCCGACAGCCGCTGGCTCATCACATCCAGCATGGACTGCACCATCAAGACGTGGGACATCCCGTCGTCCTACCTTATCGATCAGTTCAAGATGTCGCAGCCGTGCATTTCGCTGGCGATGTCGCCGAGCGGAGACTTCCTCGCGACGGCTCACGTCAACTTCTTGGGCATTTACCTTTGGGCCAACAAGAGCCTCTACGAGCACATCTCGCTGCGATCGATCGATCCCGAGAGCGAGGCGCGCGAAATGGAGCTGCCGAACATGATGAACTACGAACACAAGTATGACATTGTCGACCGGCTGAACCTCATAAAAATCGAGAAGGAAGAGGAGGAGGACGAAGCGGGCGATTTCATCGATTTGGACTACAAAACTCCGGCGCAAATTGACGACGACTTGATCACGATGTCGAAACTGTCCGAGGCAAAGTGGAAGAATCTGCTCAGCCTCGACGTCATCAAGAAGCGAAACAAGCCGAAGGAGGCTCCGAAAAAACCGAAGCTGGCGCCTTTCTTCCTGCCGACCGTCGCCGGTCTCGACTTTGCCTTCGACGTCAACGGTGCGCAAGAGGATGAGGACCATTCTCGACTAAAGACAGCGGCACTGACCGAAAACCTGACGACCTTCGGGATAATTTTGAAGAAATCAGCCGAATCTGGCGAATATACGAACTCCATCAACCACTTTGTGACGCTCAATCCCTCGATGATTGACTACGAGGTGCGATCGCTTGCGCCGCTTGGCGGCGGCTCGATCAGTCTCATGGAAAAATTTCTCGACATGATCATCGAAATGTTCGTCTCGAACCTCAATTTCGAGCTCGCGCAGTCGTATCTCGCGCTCTTCCTGAAGGCACACGCTGAAGTCATTTGCGGAAGTCGGAAGCTGATTGAGAAAATCGAGGAGGTCGAAGTGGCGCAGAACAAGAGTTGGTCAGCGATCGAGCAGAAGCTGCTCTATGGAATCGGCGTTGTAAGCAACTTAAGAAACTATTGT
Protein: 901 (aa)
MSRIFQQNRALGYVSNQVPATVRYVAGRRENCVSTCVGKSFQTFGCNHFRLLTVSGLHPDEISCLASDKYLVYSACGQIIFGWRRGNEIKHKYIGHKSKVVHLLPFGRHLISVDEDSLLKVWERKCETVFLEIPFQNDTFKISAVMHPQTYINKILVGSEQGALQLWNIRHGKLIHAFSGFGSKVTVLEQAPAVDVVGVGLANGKIILLNLKVDKVIMEFTQEWGAVTGISFRTDGPTHMATSSNNGQIAFWDLDEKKVIGTLLAHHDSVNTLKFLPNEPLLLTTSVDNSLKLWIFDKLDGTPRLLRYREGHSAPPLSIRYHGQKGDSILSSGEDSSLRIFSTISETLNVSLGRASYNRKASKKISKMQEDYRIMPPICGFTSETTREKHWDSIVAIHKNLVEATTWSFDKRKMGELKLLPAKFKDSKRSDFKTYATCLNMTHCGNFVIIGYSSGDVERYNIQSGLHRASYGEPAHESDVRGVWADNLNQLVISAGADFKLKFWHFKSKAAFGEMKMQDSILFIQGHRESSMLCVALEDFTVLIVDYETKNIVRKFVGHTAPITDACFSPDSRWLITSSMDCTIKTWDIPSSYLIDQFKMSQPCISLAMSPSGDFLATAHVNFLGIYLWANKSLYEHISLRSIDPESEAREMELPNMMNYEHKYDIVDRLNLIKIEKEEEEDEAGDFIDLDYKTPAQIDDDLITMSKLSEAKWKNLLSLDVIKKRNKPKEAPKKPKLAPFFLPTVAGLDFAFDVNGAQEDEDHSRLKTAALTENLTTFGIILKKSAESGEYTNSINHFVTLNPSMIDYEVRSLAPLGGGSISLMEKFLDMIIEMFVSNLNFELAQSYLALFLKAHAEVICGSRKLIEKIEEVEVAQNKSWSAIEQKLLYGIGVVSNLRNYC
| Type | Start | End | Length |
| CDS |
77806 |
79412 |
1607 |
| CDS |
79480 |
80575 |
1096 |
| intron |
79413 |
79479 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001659920 |
wd-repeat protein [Aedes aegypti] gb|EAT38834.1| wd-repeat protein [Aedes aegypti] |
0.0 |
| InterPro |
IPR019775 |
WD40 repeat, conserved site |
|
| InterPro |
IPR007319 |
Small-subunit processome, Utp21 |
|
| InterPro |
IPR017986 |
WD40-repeat-containing domain |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR001680 |
WD40 repeat |
|
| Gene Ontology(BP) |
GO:0006364 |
rRNA processing |
|
| Gene Ontology(CC) |
GO:0032040 |
small-subunit processome |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF02239.11 |
Cytochrome D1 heme domain |
0.013 |
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
2.7e-34 |
| Pfam |
PF04192.7 |
Utp21 specific WD40 associated putative domain |
2e-66 |
| Pfam |
PF08662.6 |
Eukaryotic translation initiation factor eIF2A |
0.012 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS207618PA |
| P. vanderplanki |
Pv.11386 |
| H. sapiens |
ENSP00000424628 |
| N. vitripennis |
NV21445-PA |
| H. sapiens |
ENSP00000423067 |
| B. mori |
BGIBMGA006359-TA |
| S. invicta |
SI2.2.0_11096 |
| A. gambiae |
AGAP004557 |
| A. aegypti |
AAEL009308 |
| D. melanogaster |
FBgn0038146 |
| A. mellifera |
GB13206-PA |
| M. musculus |
ENSMUSG00000038299 |
| H. melpomene |
HMEL007861-PA |
| C. quinquefasciatus |
CPIJ004078 |
| P. humanus |
PHUM529450-PA |
| T. castaneum |
TC000478 |
| H. sapiens |
ENSP00000422158 |