MidgeBase gene description page [Pn.08232]
Outline
| Gene ID | Pn.08232 |
| Type | Protein coding gene |
| Scaffold | PnScaf7882 |
| Start | 16232 |
| End | 17294 |
| Direction | - |
Sequence
Transcript: 756 (bp)
ATGGCTCACAGAAGTAGTAATGAAAATAATCGTGTTTATGTCGGTAATTTGCCACCGGATATTAGATCAAAAGATGTAGAAGATCTCTTCTTTCGCTTCGGAAAGGTATCGTTTGTGGATTTAAAGAACAGGCGAGGTCCACCATTCGCTTTTGTCGAGTTCGAAGACTATCGGGATGCTGCGGACGCTGTAAAAGCAAGAAATAACTACGATTATGATGGATACAAATTGCGTGTTGAATTTCCGAGAAGCGGTGGAGGCCCAGGATCTTATCGCGGGCGTTCAAATAATGATCGTGGTGGCGGAGGACGTGGAAGTGGCGGCAGCAGCAACAGACCAGCAGCACGAAGGTCCCAATACCGAGTAATGGTCTCTGGTTTGCCAGCATCTGGGTCTTGGCAGGACTTGAAGGATCATATGCGAGAGGCAGGTGATGTTTGCTTTGCTGATGTTTATAAAGATGGGACAGGAGTTGTAGAGTTTTTGCGCCATGAAGATATGAAATACGCGATTAAAAAGCTTGATGACAGTCGCTTCCGCTCGCATGAAGGCGAAGTGGCGTACATACGTATTCGCGAAGACAGTGGTGGCTCGTCATCATCCTACGACGACCGCCGTGACTATCATAGAGATGCGAGCTATGGTCGCTCGCGTTCTCGATCACCGCCTTCTCCGCGAAAACGTCGAGGCTCGCCGGTTTATAACGATTTTCGTCCACGCATTTCCCGCAGCCGCTCTCGATCCTTTAATAATTAT
Protein: 252 (aa)
MAHRSSNENNRVYVGNLPPDIRSKDVEDLFFRFGKVSFVDLKNRRGPPFAFVEFEDYRDAADAVKARNNYDYDGYKLRVEFPRSGGGPGSYRGRSNNDRGGGGRGSGGSSNRPAARRSQYRVMVSGLPASGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRIREDSGGSSSSYDDRRDYHRDASYGRSRSRSPPSPRKRRGSPVYNDFRPRISRSRSRSFNNY
| Type | Start | End | Length |
| CDS |
16235 |
16355 |
121 |
| CDS |
16431 |
16688 |
258 |
| CDS |
16751 |
16906 |
156 |
| CDS |
16985 |
17069 |
85 |
| CDS |
17159 |
17294 |
136 |
| intron |
16356 |
16430 |
75 |
| intron |
16689 |
16750 |
62 |
| intron |
16907 |
16984 |
78 |
| intron |
17070 |
17158 |
89 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
CAQ34907 |
ASF/SF2 protein [Chironomus tentans] |
4e-88 |
| InterPro |
IPR000504 |
RNA recognition motif domain |
|
| InterPro |
IPR012677 |
Nucleotide-binding, alpha-beta plait |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF00076.17 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
1.6e-29 |
| Pfam |
PF13893.1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
3.1e-09 |
| Pfam |
PF08777.6 |
RNA binding motif |
3.8e-07 |
| Pfam |
PF14259.1 |
RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) |
1.6e-19 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS207134PA |
| A. mellifera |
GB18857-PA |
| H. sapiens |
ENSP00000229390 |
| H. melpomene |
HMEL011255-PA |
| M. musculus |
ENSMUSG00000029538 |
| P. humanus |
PHUM260440-PA |
| D. melanogaster |
FBgn0040284 |
| C. quinquefasciatus |
CPIJ008786 |
| S. invicta |
SI2.2.0_14247 |
| H. sapiens |
ENSP00000462215 |
| P. vanderplanki |
Pv.06223 |
| T. castaneum |
TC015810 |
| H. sapiens |
ENSP00000258962 |
| H. sapiens |
ENSP00000463042 |
| B. mori |
BGIBMGA013096-TA |
| A. aegypti |
AAEL006473 |
| N. vitripennis |
NV12490-PA |
| H. sapiens |
ENSP00000463223 |
| A. gambiae |
AGAP010496 |