MidgeBase gene description page [Pn.08226]
Outline
| Gene ID | Pn.08226 |
| Type | Protein coding gene |
| Scaffold | PnScaf7878 |
| Start | 112 |
| End | 678 |
| Direction | + |
Sequence
Transcript: 447 (bp)
ATGTTCTTTTTTCTCTCACAAAGCAACGCCTTTTGGGCAAGTTCCCGTCTTGGAGCCAAGGTCGGCCTTGATGGCAAGGATGAGCTCGAAAATCTTCAGATTGATGCTGTCGTCGATACGATCTATGACCTGAGAGTTTTACTCCGGGATGCCCGCAATGAGAAGTCACCGGAAGTGAAGAAGGAAAAGCGCGAAAAGTTGCTGGCAACTCAGATTCCCTTCTACATTGGAGCTCTCGAAAAACTAGCGATTGAAAACGACGGACATTTGACTTTGAAGCGTCTCACTTGGGCCGATTTGTTTCTCGCCAGCACTGCAATCTACTTGAACTATTTGGCCGACCTTGACCTCTTTCAAGACGCACCAAACTTGAGGAAACTCGTCGAAAATGTCAACGCAATTGAGACTATCAAAAAGTGGATCGAAAGGCGACCCATGACGAAACAT
Protein: 149 (aa)
MFFFLSQSNAFWASSRLGAKVGLDGKDELENLQIDAVVDTIYDLRVLLRDARNEKSPEVKKEKREKLLATQIPFYIGALEKLAIENDGHLTLKRLTWADLFLASTAIYLNYLADLDLFQDAPNLRKLVENVNAIETIKKWIERRPMTKH
| Type | Start | End | Length |
| CDS |
112 |
166 |
55 |
| CDS |
219 |
302 |
84 |
| CDS |
368 |
675 |
308 |
| intron |
167 |
218 |
52 |
| intron |
303 |
367 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACP27598 |
glutathione S-transferase [Chironomus tentans] |
2e-27 |
| InterPro |
IPR004046 |
Glutathione S-transferase, C-terminal |
|
| InterPro |
IPR010987 |
Glutathione S-transferase, C-terminal-like |
|
| InterPro |
IPR017933 |
Glutathione S-transferase/chloride channel, C-terminal |
|
| Pfam |
PF13410.1 |
Glutathione S-transferase, C-terminal domain |
0.023 |
| Pfam |
PF00043.20 |
Glutathione S-transferase, C-terminal domain |
0.00015 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes