MidgeBase gene description page [Pn.08153]
Outline
| Gene ID | Pn.08153 |
| Type | Protein coding gene |
| Scaffold | PnScaf7825 |
| Start | 5721 |
| End | 7265 |
| Direction | - |
Sequence
Transcript: 1311 (bp)
ATGGATTCCGTGTCGAAGAAGGTGAAAAAGTTTTTCGAAAAGAAAAAGTCGGATGCCAAGTTTATGAAGGCTGGTCCGGGACGAAAACTGACTGATGACAGAGGCAGTGGAAGTGGTGGCAGCTCAAGCAGGGCTAGGGATAAGGACGTATACGTTCCAGTGAAACGAGACGATTTGACTGAAAGTCAAAAGAGGGCACGAGATGCTGCTCTAGACAGAATGAATAAAACTCAAAATCCGTCTTTCGATTTGTCGCTCAAAGCCATCAAGGAAAAGGCGAGGAAGGAGCTCGAAGAGGAGAGCAAAAGAAGTACTGAAAGTGATTTGAACAAAATGAAAATTAGCGAGGAGCCAAAAGAGGACGAGAACACCGTGGAAATAAATTTTACTTGCACTTTAATTTCTGATGAAATTTTACCAAAGAAAGAGTGGAAGCAAAAGATAAAAGAATTTCTGTATGACCAACTCGCGATGACCAATCATTCCGATCAGCTAGAGCCCGGCATAGCTTCTTGCCTAATCATCAAAAGCTGCAACCCTATTGAACGCGCGGAAGATTGCGTTGAGACGCTCAAGAAATATCTCTCGAACATCATTCAAAATCCGAGCGAAACAAAGTTCCATAAAATTCGGAAGAGCAACAGAGTATTTTGCGACAAGGTCGCAAACGTCGTAGGATCTGCCGAGTTTCTGAAACACGCAGGCTTCGAGGAACAAATCATCGATGGAGAGAGCTTTTTGGTTTGGTCACCCAATTCCGCAATCGAGACGCTTGAGAAACTCGTCGAATATCTGAATGAGTGCGAAGCCATTCAACTTGAACTTGATCGAAATATTCAAGTTTTACTACCGTCACAAAACAACACAGTTTCTTTGTCACAAGATTTCTTCAAGCTGACTGCGGAAGAACTTAAACGGGAGCAAATGAATAAGACTGCGGCGATGGAAGATTCTTTAGTATTGAAGACAAAGGCTATGCGTGAGAAAGAGCAGGAGCGATATGCTAAAAAGTTCAAGTATTCGGTCATCAGAATTCGGTTCCCGGACGGGCTGTTTCTACAGGGAACGTTTTCGGTTTATGAAAAATTGTCCAACATCTACGAGTTTGTCGGGGGACAGCTTCAGCACGAAGCAGCTGAGTTTTCCTTGTTTTCTCCCGATGGCTTGAAATTTAGCGAAGAAGATCTCGGCAAAACGCTGTATGCTTTGAGATTAGTCCCGAACTGCATTTTAAAGTTCACATACGAGAATGAGTCTAAATCACTGAATGAATATTTAAAAGACGAAGCCCTGATGCTTGTCAGACACGTA
Protein: 437 (aa)
MDSVSKKVKKFFEKKKSDAKFMKAGPGRKLTDDRGSGSGGSSSRARDKDVYVPVKRDDLTESQKRARDAALDRMNKTQNPSFDLSLKAIKEKARKELEEESKRSTESDLNKMKISEEPKEDENTVEINFTCTLISDEILPKKEWKQKIKEFLYDQLAMTNHSDQLEPGIASCLIIKSCNPIERAEDCVETLKKYLSNIIQNPSETKFHKIRKSNRVFCDKVANVVGSAEFLKHAGFEEQIIDGESFLVWSPNSAIETLEKLVEYLNECEAIQLELDRNIQVLLPSQNNTVSLSQDFFKLTAEELKREQMNKTAAMEDSLVLKTKAMREKEQERYAKKFKYSVIRIRFPDGLFLQGTFSVYEKLSNIYEFVGGQLQHEAAEFSLFSPDGLKFSEEDLGKTLYALRLVPNCILKFTYENESKSLNEYLKDEALMLVRHV
| Type | Start | End | Length |
| CDS |
5724 |
5823 |
100 |
| CDS |
5926 |
6074 |
149 |
| CDS |
6136 |
6265 |
130 |
| CDS |
6334 |
7265 |
932 |
| intron |
5824 |
5925 |
102 |
| intron |
6075 |
6135 |
61 |
| intron |
6266 |
6333 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663795 |
GDI interacting protein, putative [Aedes aegypti] gb|EAT45206.1| GDI interacting protein, putative [Aedes aegypti] |
1e-103 |
| InterPro |
IPR001012 |
UBX |
|
| InterPro |
IPR018997 |
PUB domain |
|
| InterPro |
IPR006567 |
PUG domain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF09409.5 |
PUB domain |
1.4e-20 |
| Pfam |
PF00789.15 |
UBX domain |
9.7e-09 |
| Pfam |
PF05405.9 |
Mitochondrial ATP synthase B chain precursor (ATP-synt_B) |
0.0081 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.17138 |
| H. sapiens |
ENSP00000467206 |
| H. melpomene |
HMEL011114-PA |
| A. aegypti |
AAEL003493 |
| H. sapiens |
ENSP00000301281 |
| D. plexippus |
DPOGS214908PA |
| S. invicta |
SI2.2.0_00299 |
| P. humanus |
PHUM380870-PA |
| M. musculus |
ENSMUSG00000019578 |
| A. gambiae |
AGAP006391 |
| A. mellifera |
GB14356-PA |
| C. quinquefasciatus |
CPIJ000080 |
| T. castaneum |
TC009319 |
| N. vitripennis |
NV17879-PA |
| D. melanogaster |
FBgn0034372 |
| B. mori |
BGIBMGA013889-TA |
| H. sapiens |
ENSP00000378246 |