MidgeBase gene description page [Pn.08150]
Outline
| Gene ID | Pn.08150 |
| Type | Protein coding gene |
| Scaffold | PnScaf7801 |
| Start | 140474 |
| End | 148141 |
| Direction | - |
Sequence
Transcript: 1233 (bp)
ATGAGAATGAATATTCGCCGCATGGCACAAGGTGATCGAAAGCATCACAAGCGAAGCAAGCGAGTGAACAAAGATGGCTCGAAACAAAATCATGTTTCATTCCCCGAGTTCCAGCAAAACGGCTCCGCGAAACAACTTGCGAACGATTACATAAATGAAGTTTTAAATGAAAATCAAGAAGAAGATTGGAAGCAAGCGCAATCAGATGATGGAGAAGGTGGACTTACATTCATCGCTAAATCATCTCCCGATACTGTTGACACATCAATCAGTCGAACGAATAGCAATAATAAAAATTTACTAATCGCACAAATAAGTAATCTAAGTGACCCCAACAAAGCACGTTATGTGAAGCATTTATCACTCAAGCTGAGTCCAGCGGACCAGACAAAGGATTGCAATACATTAGATCTATTGCCGACTGCTGCCGAATCTTTCTTTCCATGGCGCCGCGACAAGTCGTATCAAAGTTTGCGCTTCGACGGCGGTGGCGATGCTCAAAACGATGGCAGCAAAAGATATTCACGAGATTCGGAAGGTGAAGCACGCGTTACTACGCCAACAGCACCAGAGTCCATTTTGCCATGGAAGCGCGAGGACGACAAGGAGGATAATGGTGTGATTCAGCAAACTGAATTTCCGTCGTGGGCAAATAACAAAGAGTATTTAGCCTATAATTCACCTAGTGCCACTTTCTTAGGTGGAATAACGAAGCCTAAAGCGAAAAATTCCGTAATAGGTCTATTTAGACGGGAAAGTCATGGCGATTCTGACTCATCGCACGGAGGAGTCCGTGACAAGAGATCAGGATCGATTAGCGGACAAGTTGTTTATGAAATCGAGCCTACCGGGCATTCGGCGCAGTTCCCTGTCACGGCAAGTCATAGAAGAAACACAAGAAAAGGCTCGTTGTTGGAAGTTTCGGGAGATACAACCATCCCCGAAGAGATACCACCAGGAGCAGCCGGAGGAGGAGCGACAACCGGAGTGCCGTCCTCACAGAAACGAGGACAGCAGTTTATAGTCGCAAAAACGAGCCCGAAGAGTTCACGCCGAGGCAACTCCGATCATCAAACACGTGGTCTGCTGTCGCCACACAGCTCCGATTCTGACTCAGATGCTGACGTAAACGAGAAGCTCATTCAGAAGCAGCAGAAGGTGAAAAAACACTTCTCCGTTGGCAGTGACGATGATGATGACGACGACGAAGGCGGCTTAACTATGAAACGTTCC
Protein: 411 (aa)
MRMNIRRMAQGDRKHHKRSKRVNKDGSKQNHVSFPEFQQNGSAKQLANDYINEVLNENQEEDWKQAQSDDGEGGLTFIAKSSPDTVDTSISRTNSNNKNLLIAQISNLSDPNKARYVKHLSLKLSPADQTKDCNTLDLLPTAAESFFPWRRDKSYQSLRFDGGGDAQNDGSKRYSRDSEGEARVTTPTAPESILPWKREDDKEDNGVIQQTEFPSWANNKEYLAYNSPSATFLGGITKPKAKNSVIGLFRRESHGDSDSSHGGVRDKRSGSISGQVVYEIEPTGHSAQFPVTASHRRNTRKGSLLEVSGDTTIPEEIPPGAAGGGATTGVPSSQKRGQQFIVAKTSPKSSRRGNSDHQTRGLLSPHSSDSDSDADVNEKLIQKQQKVKKHFSVGSDDDDDDDEGGLTMKRS
| Type | Start | End | Length |
| CDS |
140477 |
140783 |
307 |
| CDS |
142505 |
142730 |
226 |
| CDS |
143563 |
143724 |
162 |
| CDS |
144059 |
144115 |
57 |
| CDS |
145401 |
145634 |
234 |
| CDS |
146918 |
147019 |
102 |
| CDS |
147855 |
147927 |
73 |
| CDS |
148070 |
148141 |
72 |
| intron |
140784 |
142504 |
1721 |
| intron |
142731 |
143562 |
832 |
| intron |
143725 |
144058 |
334 |
| intron |
144116 |
145400 |
1285 |
| intron |
145635 |
146917 |
1283 |
| intron |
147020 |
147854 |
835 |
| intron |
147928 |
148069 |
142 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001850852 |
alkali metal ion/proton exchanger 3 [Culex quinquefasciatus] gb|EDS32728.1| alkali metal ion/proton exchanger 3 [Culex quinquefasciatus] |
4e-76 |
| InterPro |
IPR018422 |
Cation/H+ exchanger, CPA1 family |
|
| InterPro |
IPR018416 |
Na+/H+ exchanger, isoforms 3/9 |
|
| Gene Ontology(BP) |
GO:0006812 |
cation transport |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0015299 |
solute:hydrogen antiporter activity |
|
| Pfam |
PF09716.5 |
Malarial early transcribed membrane protein (ETRAMP) |
0.56 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.14140 |
| Pn.14141 |
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL003119-PA |
| N. vitripennis |
NV18667-PA |
| A. gambiae |
AGAP009036 |
| M. musculus |
ENSMUSG00000026062 |
| M. musculus |
ENSMUSG00000026065 |
| H. sapiens |
ENSP00000295269 |
| P. vanderplanki |
Pv.04633 |
| C. quinquefasciatus |
CPIJ009357 |
| M. musculus |
ENSMUSG00000036123 |
| H. sapiens |
ENSP00000233969 |
| D. melanogaster |
FBgn0040297 |
| H. sapiens |
ENSP00000363199 |
| A. mellifera |
GB10118-PA |
| A. aegypti |
AAEL001503 |
| H. sapiens |
ENSP00000363202 |
| B. mori |
BGIBMGA011832-TA |
| B. mori |
BGIBMGA011831-TA |
| M. musculus |
ENSMUSG00000014786 |
| D. plexippus |
DPOGS213550PA |
| T. castaneum |
TC003796 |
| H. sapiens |
ENSP00000445520 |
| P. humanus |
PHUM467900-PA |
| H. sapiens |
ENSP00000299798 |
| H. sapiens |
ENSP00000264938 |
| H. sapiens |
ENSP00000263980 |
| M. musculus |
ENSMUSG00000028854 |
| H. sapiens |
ENSP00000422983 |
| S. invicta |
SI2.2.0_10800 |