MidgeBase gene description page [Pn.08110]
Outline
| Gene ID | Pn.08110 |
| Type | Protein coding gene |
| Scaffold | PnScaf7777 |
| Start | 47 |
| End | 4900 |
| Direction | - |
Sequence
Transcript: 3849 (bp)
ATGCAGGCAAAGTCGCGGCGCTCCGTGCTCGTCATCTGTCGGACGATCCTCGAGGTTTTCAAGCTGCGCGACGCCATCGAATTCATGCGGCAGCTCGAGGATTTCACGGAGCTCAAGGTGAAGCTCTACGCGGACGACGGCGACAGCGACGTGGTGAAGGCGAAGGTCGGGCCGTGCGAGATCATCATCGCCACCAACATCGCCGGTCGGGGGTCGAATTTTCGCACCAAGCCCGAGTTGGAGGCCAACGGAGGCCTGCATGTGTGCGTGAGCTTCCTGCCGACCAACATGAGGGTGCAAAGTCAGGCGTTTGGACGGACATCGAGGCAGGGCAAGAAGGGAACCGCACAGATCATCGCCAAGGCCTCCGACATTCGCGACCTCGGCGGCGACATAAATAACTTCACCCACTTGGAGTACGACAGTGTCGAGGAGTTCCGCGACGAGAAGGAGAAGGAGCGCCTCGCTGCGATTAGCTCGAGCGAACTCCCGAAAATCATCTTCATGGACGCGATTTTCCAGAAATTCCTGAGCTTTTATCGCGAGTTGCGCGACCAAGAAGGCTACACAAAGCCCTACCTGAAGGACCTCAAGGAGCACTGGGCCTTTTGGCTCAAGGCCAAGGACTACAAGCACATCGACGGCCTCAGCGTAGACGCCGAGTTTGAGCAGTTCAAGGGCGAAGTTTCGCGGCTTTTGACGTCGAAAGTCTACCGAAATCCCTTCTACTACATCGAGGACGCGGAGCTGAGCATTTTGGCGGAGAAACTGAACGAGGCGAAGGAGGTTCTGCAGAAGGCGATCGCCTCGATGCCGAGCAATCCCGAGCTCCTCTACACCGCCAACATCAAGCTCTTCGAGGTCGCCATCGAGCAGGGACACGCCATGAGGGATCGAGTGCTCAAGCTCTTGAGGAAACTCGCGATTTACGGCTATTTCGAGGACGATCACGAGCACTCCCAGTACTTGAGTGAAGCGCGCGAATACTTGACTCGAGCGCGCACCGGCCTGCAAGTCGAAATCGATTACATCAAGGAGAACTTTTTTGGGGACGCTTTTAACGAAATTCTGACCCGAGGGTTGCCCTCCAACAGACTCAACAGTAGAGGTGATGGAAGGTCTGAAGAGTCGCTGCCACCACTGGCGAAGCACATCAGGTCGCGCATCACAATCCTCTCCACTTTTGACGGCCAACTCGAGTCGCTCGGCGAACAGCTGACGACGATGAACAACGCCATCGTTCGCACGCGCATTCCCAACTACTTTGCCAACTTCCAGCCCGACTCGCCCAACGACCGCGAGCTGAAGAACGCGATGCTGCCGACAGAGCTCAACGATCTCGCGGCCATCGGCCTCGACACCGTCTACTCGCTGCAGGAGGTCAAGGACGTCCACAACGCGGTCATTGTGGGGGCGCAGGTGCAGATTGGCGCCGGTCTCACCGCCCTCGCCGCTGGCTTCGCTTTCCCGCCGGCGCTGCCTCTCGCCGGCCCGGTTGCCGGCGCCCTCATCAGCGAGGGCTTCTGCGACATCATCGTGGAACTGCTGAGGTCGATGGGCGACACCTTCGACTGGGTTCGCTACCTCAAGGACAAGGCCATCAGCTACGGCATCGCCATCGCGACCTTTGGCCTCTCGGCCGCCACCTCCAGCCTCAAGCTCCTCGCCAAGGTCATGCAGGCGATCAAGAAGGTGGCGAAAGCGCTCAAGAGCTGCCCGGTTTTCACGAGAGTCGCGCAGAAGGCGGCCGCAGCCCTCGAAAGAGTCGCCGCGCTCCTCCAGAGCCAAATCGCGAAAGCCCGGCAGCTGACCAAGGCGACGACCTTCGGCGCAGCGGCGCGCACAGTGGCGGCCGAAACGTTCCGCGACGCAATTTTCACGCTCGTGAGCGAGAAGCTCGTGACCGAGAACCTGCGAGGAGCTCTCGACGGCCTCAAGCCGCAGCTCAAGGAAAAATGCGCGGCGACGGCGCGCGCAGCAATAAGCGAGTCGGACGTCGCCCGAGTCAGCGCGAATCGCCTCGGCGAGCTGGTGGACGAGCTGCTCGTGTCGCAATCGATCGGCGGACACATCGGCGAGGTGGCGCGCGAGATCGGCTTGGGCGTGCTGCGCGTGCAGCGAAACTGGGCGCTGAAAGTCGCGAGCCTGACGATCGACGCGCTCGTGACGACGGTCGACTTGACAGCCGGCCTCAACGGCTTCTGCCGCGATCTGCGCGCGAGACTGAACAACGAGGCAACGACCGAAGACGGTAGCAGCTCGGTCGCGGCCAAATTCGAGGCGATCGCTGCGCAAATGAGCGAGTACATGTGCGCGCAGATCGTGAAGGTGCTCGGGCGAGGCGTCAACACTTTTGCTGTGTCGCCGATCATCGCGAAAGTGTCCGACGCATTTTCGACTCGCGACAAAGTCGAGAGCAAGGAACTGGTCGCAGGCGGCGATGCCAACTCGAGTCGACTGAGCGAGGCCTACAACCTCATGAGCCTAAGACCCGGCGCGAGCGAGGCGGAGGTTGGGAGAAGATTCAGAGAGCTGTCGCTCGAAAGTCATCCGCAGCGACCTGGCGGCGACCAAGAGCGTTTCCAAGCACTTGTCAATGCACGCGACGACATCGTGCAGTCGATGCGCGGTTCCTCCACAGTCCTCTTTTCCACTGCACCAGGACGTGGCAGCGACTTCTCAGCGACTCCGGCACAGCCGACGACCTATCACGCGCCGCCATCACCGCCGCCGATGCCGAGAACCGAGCGCAACCAGGCGCACGCCGGCAACATCGCGACCATCTCGCGCGCCCTAAAAATCAGCACGAGGATCAACGAAATTGATCCCCAAACTGGCGGCGTGGTCGCTGTGCATCGGTTTGGCCGCAACAACGGCGGCGGCGGCGGCGACGACGTCATAACACTCAACTACACGCCGGCCACAAGAGACCGTCTTGGCCACTACACGGTCGCAGTCGGAACACCAGGGCCGTCCAGCGGCGACTTCAACTGTCTCTACGACGCCCTGAGCGCGTCGCTGCAACGGCGCAATATTTCGCTGACGCCCGAACAGCTGCGCACCGTCGGTGAGTCGAGTTCGGTGGCGAATTTTCGCTTTAATCTCGCGAACAACGCGTCGCGCCTCCTCAATCACGCCGTCACGCGGAACCTCTACGTGAGGGCGCAAAACGCGATTTTGGTGGGCGGCGCCGTCAATTCGTGGTACCTCCGCGTGGAAAACGACCGTGGCCAATATCCGGGCGGCATCATTTACGACAAGAATGTCATCGGGCCGCCCATGATGCGCGTCTTCAACAAAATCGTCGACTACTCGCAGGCGCTTCGTCCGCTGGTGAATGCCAGCAACAAACGGCAGCGCTTCGCCACCAGCGAGCGGAAGCTGGCGCAGCGGGGCGCGATGGTGGGCGTGATGAGCGCGGAGCTCTTCGACACCACGACCCAGAAGACGATGTTCTTCAACCGGTGGACGCTGTCGGGCGACAAAGCCTACACCATCCGGCGCGAGATTCTGAACGAGGACCTCGGCCAGATCAGCGGCTTTCGCTTCGTGAACGACATCGACTTCGAGCGCGACGACCGGCGCGTCTACGACCTCCACCGGCACCCGACCGACGGCGTCTACACGCAGTCGTGCGCCGCCGTGAAGCTCTCGATGGCGCTGAGCGATCATCTGAGGCGTTTTCCGCAGTTGGAGGTGCGCGCGCGCTACATGGCCGAGTGCTACTTCTCGGCCGGCGGCCACCAAGGACCGTCACCGAAAATCACGCGGGAAAACATCAACCAGCGCGTCGTGGCGTCTTGCGAGAAATGCGAGAAAGCACTGCCCTTCACTGTCCCGCACGAACAC
Protein: 1283 (aa)
MQAKSRRSVLVICRTILEVFKLRDAIEFMRQLEDFTELKVKLYADDGDSDVVKAKVGPCEIIIATNIAGRGSNFRTKPELEANGGLHVCVSFLPTNMRVQSQAFGRTSRQGKKGTAQIIAKASDIRDLGGDINNFTHLEYDSVEEFRDEKEKERLAAISSSELPKIIFMDAIFQKFLSFYRELRDQEGYTKPYLKDLKEHWAFWLKAKDYKHIDGLSVDAEFEQFKGEVSRLLTSKVYRNPFYYIEDAELSILAEKLNEAKEVLQKAIASMPSNPELLYTANIKLFEVAIEQGHAMRDRVLKLLRKLAIYGYFEDDHEHSQYLSEAREYLTRARTGLQVEIDYIKENFFGDAFNEILTRGLPSNRLNSRGDGRSEESLPPLAKHIRSRITILSTFDGQLESLGEQLTTMNNAIVRTRIPNYFANFQPDSPNDRELKNAMLPTELNDLAAIGLDTVYSLQEVKDVHNAVIVGAQVQIGAGLTALAAGFAFPPALPLAGPVAGALISEGFCDIIVELLRSMGDTFDWVRYLKDKAISYGIAIATFGLSAATSSLKLLAKVMQAIKKVAKALKSCPVFTRVAQKAAAALERVAALLQSQIAKARQLTKATTFGAAARTVAAETFRDAIFTLVSEKLVTENLRGALDGLKPQLKEKCAATARAAISESDVARVSANRLGELVDELLVSQSIGGHIGEVAREIGLGVLRVQRNWALKVASLTIDALVTTVDLTAGLNGFCRDLRARLNNEATTEDGSSSVAAKFEAIAAQMSEYMCAQIVKVLGRGVNTFAVSPIIAKVSDAFSTRDKVESKELVAGGDANSSRLSEAYNLMSLRPGASEAEVGRRFRELSLESHPQRPGGDQERFQALVNARDDIVQSMRGSSTVLFSTAPGRGSDFSATPAQPTTYHAPPSPPPMPRTERNQAHAGNIATISRALKISTRINEIDPQTGGVVAVHRFGRNNGGGGGDDVITLNYTPATRDRLGHYTVAVGTPGPSSGDFNCLYDALSASLQRRNISLTPEQLRTVGESSSVANFRFNLANNASRLLNHAVTRNLYVRAQNAILVGGAVNSWYLRVENDRGQYPGGIIYDKNVIGPPMMRVFNKIVDYSQALRPLVNASNKRQRFATSERKLAQRGAMVGVMSAELFDTTTQKTMFFNRWTLSGDKAYTIRREILNEDLGQISGFRFVNDIDFERDDRRVYDLHRHPTDGVYTQSCAAVKLSMALSDHLRRFPQLEVRARYMAECYFSAGGHQGPSPKITRENINQRVVASCEKCEKALPFTVPHEH
| Type | Start | End | Length |
| CDS |
50 |
580 |
531 |
| CDS |
743 |
1502 |
760 |
| CDS |
1688 |
2565 |
878 |
| CDS |
2666 |
3226 |
561 |
| CDS |
3485 |
4204 |
720 |
| CDS |
4502 |
4900 |
399 |
| intron |
581 |
742 |
162 |
| intron |
1503 |
1687 |
185 |
| intron |
2566 |
2665 |
100 |
| intron |
3227 |
3484 |
258 |
| intron |
4205 |
4501 |
297 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AFC74896 |
preprotein translocase SecA subunit-like protein [Rickettsia parkeri str. Portsmouth] |
1e-110 |
| InterPro |
IPR001623 |
Heat shock protein DnaJ, N-terminal |
|
| InterPro |
IPR014018 |
SecA motor DEAD |
|
| Gene Ontology(MF) |
GO:0031072 |
heat shock protein binding |
|
| Pfam |
PF00226.26 |
DnaJ domain |
9.2e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.08270 |
| Pn.14106 |
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV25445-PA |
| A. gambiae |
AGAP011982 |
| T. castaneum |
TC015984 |
| C. quinquefasciatus |
CPIJ015813 |
| A. gambiae |
AGAP008714 |
| A. aegypti |
AAEL012505 |
| B. mori |
BGIBMGA009572-TA |
| N. vitripennis |
NV31091-PA |
| P. vanderplanki |
Pv.17177 |
| C. quinquefasciatus |
CPIJ018005 |
| T. castaneum |
TC015405 |