MidgeBase gene description page [Pn.08098]
Outline
| Gene ID | Pn.08098 |
| Type | Protein coding gene |
| Scaffold | PnScaf7711 |
| Start | 4858 |
| End | 7010 |
| Direction | - |
Sequence
Transcript: 1875 (bp)
ATGTTCATCGACAACATGACGCTCACGTCGCCCAACCAGAACACCTTCACCGTCTACACCGAGCTGCGCTCCGACTACCACCAGCTCACCTTCGTCAGCAACCTCAGCGGCGCCGGCTCGTGGCACTACAACGTCAAGCGCTTCGCCGGCCCACTGCCGCACTTCGTGCAGGTCCTCGCGCACCCGAAACTCGACGCCCGCGACTTCATACGAGCGCGCGCCTGGACGCGCCGCACCGGCGACGGCGTGGTCGTGCTGTACGTGGAGGTGCGCCAGGGCCTGCTGCCCATCAACGACGCCCTGGTCGAGGCCGTTGTGACGGCGCCGAGCGGCAAGGAAAGCCGGCTGCAGCTCTTCGACAGCGGCAGCGGCGAGCCCGACATCACGCGCGGCGACGGCATCTACACGCGCTACTTCCTCGGCGGCGACGCCGGCATGTACCAGTTCGCCATCCGCGTCAGCGACAACGGAAACACCGCCTACGTGCAGATGGAGCGCGATCCGACCCGGCAGATCCACTGCTGCGGCAGCTCGATAGCGACGCCTACGAAGCAGCCGGTCACGCCGTTCACGCGCAACATCGCGCCGCTGACAATTTTCCTCGACCAAGCGGAGGTCGACGCATCGGAAGCCAAGCGACCGTCGCTGGGCCGCATCGGCGACCTGCGCGTCGTCGCGCCGACCGCCAACGGCAGCGAGCGCGTGGCGCTGGAGTGGACGGCGCCGGACACCGGCTCGGACGACACGCCGCCCGACTACGAGATCCGGTACGCGCTGACGCTGAAGGACATCGTCGACTCGTTCGAGACGCTCGCGATGCCGTGGCCGCTGGCCGAGCCCATCCCGCACACCATCGGCCAGGGCGCGTCGGCGACGCTCAACCTCCACAGCGAGCCGTCGCTCGTCGGCGTGCCCTTCTACGTGGCCGTCCGCTCCGGCGCCACGGTCAGCAACTTCGTGCGCGTGTTCGTGCCGAAGCGCCGTCCGACGGCGTCGCCCACCTACACGCACGTCGACAGCGACCTCTACGAGACCGACCCGGCCATGCAGCCGGCGGACGCGGACGAGCCGGGCTTGGGGATTTTCGCGCGCCACGCCGCCATCCCGTGGCCGATCGTCGTGCCGGTCGCGGCCTGCGCGCTCCTCCTGCTCCTCCTCGCCGTCGTCTACTGCTGGTGCTGCGCGGCGCGCAAGCGCAGCTACGGCGACGCCAAGAAGCCGACCTCGCCGTCCAAGCCCGCCATCTCGGTGATCGCGCCGAGCTCGCCGGCCGCCCAGCCCAACCAGTACCACGTCGACCCCGTCAACGGCAGCGTGCACGGCTACCTGGTCGACGCGCCCGACCACCACACCGTCGGCCTGCCCACCCTCGACGACGACCTCTTCAAGCCCGACTTCGGCGACCACGACAAGATGCTCATCGAGGAGATGCGCCAGCAGCAGCGCTTCCAGCAGCAGGCGCTCATCGACGCCTACGGCGACCAGCCGATCCTCACGCGCAACGGCCACTACCTCAGCCCCTACGAGAGCTGGTCCGCGTCGACGCTCCTGCACGAGCACGAGGTGCGCCAGTCGCCCACCGGCCACGACGGCGCCCTCCTCTACGTCGACGCCAACGGCGACATCGCGCCGCCCGTGCCGCCCCATCCCTACGCACAGCACCAGCAGCTCGCCATGGGCGGTGGCGGCGGCGGCGGTGGCAACGGCACGTACGGGTATGCCGGCGATGCGGCACGCGCTCCGCCGCCCCAGTACAGCAGCGTCTACCGGCCGCTCGTGCGCGGCCTTCCCGGCCAGGGATCCATGCAGTCCGTCGTGAGCAGCGCGATGATGAGCAACGGCGACGCCAAGAAGATACGCAACGTGACGATGGTG
Protein: 625 (aa)
MFIDNMTLTSPNQNTFTVYTELRSDYHQLTFVSNLSGAGSWHYNVKRFAGPLPHFVQVLAHPKLDARDFIRARAWTRRTGDGVVVLYVEVRQGLLPINDALVEAVVTAPSGKESRLQLFDSGSGEPDITRGDGIYTRYFLGGDAGMYQFAIRVSDNGNTAYVQMERDPTRQIHCCGSSIATPTKQPVTPFTRNIAPLTIFLDQAEVDASEAKRPSLGRIGDLRVVAPTANGSERVALEWTAPDTGSDDTPPDYEIRYALTLKDIVDSFETLAMPWPLAEPIPHTIGQGASATLNLHSEPSLVGVPFYVAVRSGATVSNFVRVFVPKRRPTASPTYTHVDSDLYETDPAMQPADADEPGLGIFARHAAIPWPIVVPVAACALLLLLLAVVYCWCCAARKRSYGDAKKPTSPSKPAISVIAPSSPAAQPNQYHVDPVNGSVHGYLVDAPDHHTVGLPTLDDDLFKPDFGDHDKMLIEEMRQQQRFQQQALIDAYGDQPILTRNGHYLSPYESWSASTLLHEHEVRQSPTGHDGALLYVDANGDIAPPVPPHPYAQHQQLAMGGGGGGGGNGTYGYAGDAARAPPPQYSSVYRPLVRGLPGQGSMQSVVSSAMMSNGDAKKIRNVTMV
| Type | Start | End | Length |
| CDS |
4861 |
6236 |
1376 |
| CDS |
6512 |
7010 |
499 |
| intron |
6237 |
6511 |
275 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001850631 |
ca-activated cl channel protein [Culex quinquefasciatus] gb|EDS32387.1| ca-activated cl channel protein [Culex quinquefasciatus] |
6e-84 |
| InterPro |
IPR015394 |
Domain of unknown function DUF1973 |
|
| Pfam |
PF09315.6 |
Domain of unknown function (DUF1973) |
6.6e-24 |
| Pfam |
PF02480.11 |
Alphaherpesvirus glycoprotein E |
7.2e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000068547 |
| M. musculus |
ENSMUSG00000074195 |
| H. sapiens |
ENSP00000234701 |
| H. sapiens |
ENSP00000359594 |
| M. musculus |
ENSMUSG00000028255 |
| M. musculus |
ENSMUSG00000037033 |
| P. humanus |
PHUM570100-PA |
| H. sapiens |
ENSP00000359596 |
| C. quinquefasciatus |
CPIJ009097 |
| A. gambiae |
AGAP004059 |
| M. musculus |
ENSMUSG00000036960 |
| H. sapiens |
ENSP00000378200 |
| M. musculus |
ENSMUSG00000056025 |
| T. castaneum |
TC006687 |
| C. quinquefasciatus |
CPIJ009092 |
| A. aegypti |
AAEL010924 |
| P. vanderplanki |
Pv.12267 |
| M. musculus |
ENSMUSG00000028262 |