MidgeBase gene description page [Pn.08081]
Outline
| Gene ID | Pn.08081 |
| Type | Protein coding gene |
| Scaffold | PnScaf7686 |
| Start | 21272 |
| End | 22656 |
| Direction | + |
Sequence
Transcript: 1125 (bp)
ATGACAGAGGGAAAAGTTATTACGTGCAGGGCGGCAGTTTTGTGGAAGGCAAATGAGCCATTTGTGATTGAAGAGATTCAAGTCGATCCGCCGAAGGCCGGCGAAGTTCGCGTGAAAATGGTTTCAACGGGAGTTTGCTTCTCGGACGTGTCCGGATCGACCGGGAAAATTTTGGGCGTGAGATTTCCAATCATTCTCGGGCACGAGGCGTCCGGCATCGTGGAATCCATCGGCGAAGGTGTCGAGAGCGTCAAGCCTGGCGACCATGTTCTTCCTCTGTTTTTGCCGCAATGCAAAAAGTGTCGCGTGTGTAGAGATGAGAAAGCCAACAGCTGTCTAGAGTTTATGGGCGCGCAGGTCAAAGGCGTGATGGCCGATGGAACATCTCGGTTCAGTTGCCGCGGAGAGACCGTGTACACCTTTGTTGGCTGCTCCACTTTTACAGAGTACTCCGTCATAAGTGAAATAAATTTGGCAAAAATAGCTCTCGAGGCGCCTATGGATAAGGTCGCTCTAATCAGTTGCGGGATCTCTACGGGATACGGCTCGGCGATAAATCTTGCGGGCGTCCGAAAAGGCAGTACTTGCGCTGTTTGGGGTTTGGGAACCCTCGGGCTGTCTGCCGTCATGGGATGCAAGAATGCTGGCGCTTCGACAATCATCGGCATAGATCTCAACCCGGACAAATTCAAGATTGCCGCCGAAATCGGAGCGACCGATTTCGTCAACCCTGCGGAGCTTTCCGTTCCCATCGACCAGTATTTGTCTGAGAAATATCACGATGAGATCGAGTACACGTTCGAGTGCATCGGCAGAGTTGAGACAATGGAGCAGGCGTTCAACAATTGTGCTGTCGGCAACGGCGTTTGTGTACTGATCGGAGTTGCCGGCCTCACATCAATGATGCAAATCTCGCCCGGACAGTTTTTGGTGGGAAAGACACTCATGGGCTCGCTTTTCGGCGGCTACAAGAGCCGCGATGCCGTGCCGAAGCTGGTCGACGACTACATGAACGGCAAATTAAACATCGATTGCTTCATCACGCACACAATGAAGTTGGACGATATCAACGAGGCCTTTGATTTGCTCAAAACCGGTAAGAGCATTCGCACAATCCTAAACTTG
Protein: 375 (aa)
MTEGKVITCRAAVLWKANEPFVIEEIQVDPPKAGEVRVKMVSTGVCFSDVSGSTGKILGVRFPIILGHEASGIVESIGEGVESVKPGDHVLPLFLPQCKKCRVCRDEKANSCLEFMGAQVKGVMADGTSRFSCRGETVYTFVGCSTFTEYSVISEINLAKIALEAPMDKVALISCGISTGYGSAINLAGVRKGSTCAVWGLGTLGLSAVMGCKNAGASTIIGIDLNPDKFKIAAEIGATDFVNPAELSVPIDQYLSEKYHDEIEYTFECIGRVETMEQAFNNCAVGNGVCVLIGVAGLTSMMQISPGQFLVGKTLMGSLFGGYKSRDAVPKLVDDYMNGKLNIDCFITHTMKLDDINEAFDLLKTGKSIRTILNL
| Type | Start | End | Length |
| CDS |
21272 |
21406 |
135 |
| CDS |
21479 |
21634 |
156 |
| CDS |
21719 |
21965 |
247 |
| CDS |
22067 |
22653 |
587 |
| intron |
21407 |
21478 |
72 |
| intron |
21635 |
21718 |
84 |
| intron |
21966 |
22066 |
101 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACD61704 |
alcohol dehydrogenase 3 [Chironomus riparius] |
1e-120 |
| InterPro |
IPR011032 |
GroES-like |
|
| InterPro |
IPR020843 |
Polyketide synthase, enoylreductase |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013154 |
Alcohol dehydrogenase GroES-like |
|
| InterPro |
IPR002328 |
Alcohol dehydrogenase, zinc-type, conserved site |
|
| InterPro |
IPR013149 |
Alcohol dehydrogenase, C-terminal |
|
| InterPro |
IPR002085 |
Alcohol dehydrogenase superfamily, zinc-type |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0016747 |
transferase activity, transferring acyl groups other than amino-acyl groups |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF13602.1 |
Zinc-binding dehydrogenase |
0.0059 |
| Pfam |
PF00107.21 |
Zinc-binding dehydrogenase |
1.3e-18 |
| Pfam |
PF08240.7 |
Alcohol dehydrogenase GroES-like domain |
3.8e-25 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000378359 |
| P. vanderplanki |
Pv.08140 |
| H. sapiens |
ENSP00000237653 |
| H. sapiens |
ENSP00000378358 |