MidgeBase gene description page [Pn.08076]
Outline
| Gene ID | Pn.08076 |
| Type | Protein coding gene |
| Scaffold | PnScaf7684 |
| Start | 3720 |
| End | 5056 |
| Direction | - |
Sequence
Transcript: 891 (bp)
ATGGCTTCGTGTGCAGCTCGAGTCAAGGCCATTCAAGATGAAAACTCCGACCTCGACGACATTCCGTACAACTTCTTGGTTGGCGGCGATGGCAGGATGTACGAGGGTCGGGGCTTCGAGGTGGAGGGCCAGCACACGGCAAATCAGCACGCCTCCGAGTTCAACAGCATCGGCATTTGCGTGGCTTTTATCGGCAGCTACGCCGCAAGGCCGCCATCTGACGACCAAATGAGAGTCTTTGCGGACTTTTTAAGTCATTTTACTAGAGCGGGAAATGTCAGCGAAGACTACATCGTTGTGCTGCAGGATGACTTGATTTATAGGAAAGTTCCGTCCAGAGAGCTCAACCTAGCTGTCGGGAATGTCACGAACTATTATCCTTTGCAAAAAATATATCGGCGTGAAGAATGGCAGGCGAGAAGTCCGTCAACTGTACTCGGCCGTTTCAGTCGAGTCATGGACTGGGTTATGCTGACTCACACTGCATCGAATCCATGCAACGACGTGACAAGTTGCAGCAGTTACATAAGGAGTCTCCAAAACTACCAGATGAACTCCTGGTCTGACATAGGCTTCAACTTCATGATTGGCGGCGACGGTTTCGTGTACGAGGGCCGAGGCTGGGACAACATCGGTGTCATTTGGAGTGGCAGCAACCACCTGGTGGTCGCCATCGGAATGATCGGCGACTTCACGTCAGTTGAGCCGAGTCAGGGCATGCTGAACGCCCTCATTCGACTGATGGACGAAGCGGAGGCGTTGGAAAAGCTGACGTTCGACTTCGTGGTCAGTGGAAGACAGGAGCAGCCGGGCGGAGCCGGTCCCGGCAATGCCTTCATGGTCCACGTGAGAACCTGGTGCCGGTATAAGTTTCGAGCCGCTCCGTGCGAC
Protein: 297 (aa)
MASCAARVKAIQDENSDLDDIPYNFLVGGDGRMYEGRGFEVEGQHTANQHASEFNSIGICVAFIGSYAARPPSDDQMRVFADFLSHFTRAGNVSEDYIVVLQDDLIYRKVPSRELNLAVGNVTNYYPLQKIYRREEWQARSPSTVLGRFSRVMDWVMLTHTASNPCNDVTSCSSYIRSLQNYQMNSWSDIGFNFMIGGDGFVYEGRGWDNIGVIWSGSNHLVVAIGMIGDFTSVEPSQGMLNALIRLMDEAEALEKLTFDFVVSGRQEQPGGAGPGNAFMVHVRTWCRYKFRAAPCD
| Type | Start | End | Length |
| CDS |
3723 |
4015 |
293 |
| CDS |
4082 |
4172 |
91 |
| CDS |
4396 |
4520 |
125 |
| CDS |
4616 |
4992 |
377 |
| CDS |
5052 |
5056 |
5 |
| intron |
4016 |
4081 |
66 |
| intron |
4173 |
4395 |
223 |
| intron |
4521 |
4615 |
95 |
| intron |
4993 |
5051 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_874055 |
PREDICTED: peptidoglycan recognition protein 4 [Bos taurus] |
1e-28 |
| InterPro |
IPR015510 |
Peptidoglycan recognition protein |
|
| InterPro |
IPR002502 |
N-acetylmuramoyl-L-alanine amidase domain |
|
| InterPro |
IPR006619 |
Peptidoglycan recognition protein family domain, metazoa/bacteria |
|
| Gene Ontology(BP) |
GO:0009253 |
peptidoglycan catabolic process |
|
| Gene Ontology(MF) |
GO:0008745 |
N-acetylmuramoyl-L-alanine amidase activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF01510.20 |
N-acetylmuramoyl-L-alanine amidase |
1.3e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes