MidgeBase gene description page [Pn.08041]
Outline
| Gene ID | Pn.08041 |
| Type | Protein coding gene |
| Scaffold | PnScaf7579 |
| Start | 629 |
| End | 3313 |
| Direction | + |
Sequence
Transcript: 1398 (bp)
ATGAGCAGCAAAAAGCCGGAGCCGTTGTCGAAGGGCGCACTAATCCTGCAGGAGAAGCCCTTCGCCTACATCGTCAAGTCAAAGTTCATCAAGGAGCGCTGCGACTTCTGCCTGTCGGCGGGCAAGCTCCTCAAGTGCGGCGGCTGCGAGTTCTCGCACTACTGCGGCGTCCTCTGCCAGCGTGACGCGTGGGCGGAGCACAAGTACGAGTGCCTGTGCATGAAGAAAATCATGCCGCGCACGCTGCCCGACGCGGCCCGCATCATGGCCAAAATCATATGGAAGCTGCAGTACGGCGGCTACCTCCAGAAGTTCTACTACTCGCGCAGCGGCTTCCGCAAGTTCAACGATCTCATGCCGCACTTGGAGGACATCAAGTGGGACCCCAAGCGCATGGAGCACGTGCAGAGTCTGTACATGGTCCTCAAAGAGTACCTCGCGCCGGAGCATTTGCCCAACCAGACGGAGTTCCTCGGCATCTACGGGCGGCTCTGCATCAACAGCTTCAACATTCTCGACGACGATCTCAACTCGATCGGCACGGGCATCTACCTGGCCGCGTCCATCCTCGACCACAGCTGCCGGCCGAACGCGGTCGCGACCTTCGAGGGCCCCCAGCTCAGCATCCGACTCATCGAGGACATTCCCGAGCTCAAGTGGGAGGACATCCGCATCTCGTACGTGGAGCCTCTCGACCTGCCCGAGGTGCGCCGCGACGAGCTGCGCAAGGCCTACTACTTCGACTGCGAGTGCGCCAACTGCCGCGACGAGAAGCAGCGCGCGCAGATGGTGGCCATGGCCTGCCCCAAGGAGGGCTGCGACGGCGCCATCGACGTCATGGACGAGAAGTGCCGCGAGTGCTCCGCCGAAATACGCGAGGAACATCGCGCCACATTCGACGACGTCCTCGACATGACGCGCGTCATGCTCGAGGAGATGCAGGAGACGCGATACATCGACGTGTGCAGGAACCTCGTGAAAAAGCAGACGCGCGTGCTGCACGACAAGAACATCTGGCACCTGAAGACACTGGACCTCGCCTTCGAGGCGGCCATCGACTTCGAGGCGTGGCCCGAGGCCGTCGTGTACGGCGAGAAGTTCGTCAAGGGCCTGAGCCACTACACGTCGCCATTCAACCCACTTGTCGGCATCGATCACCTGAAGTTGGGCAAGATTTATCCGCACCTCAACGAGTTTCAGACCGCCATTCACCATATAAGGGAGGCGGGCGAGGTGCTAAAGGTGACGCACGGCGACCAGTCGCGACTCATGCGCGACTTCGTGCGACCGCTGCTGCGCGAGACACAGATCCTGCTGGAGGAGAGCCAGCGAGTCAAGTTGCCGCCGCCCGCCGACGACGACGAGGAGGAGGGCGGCGAGGCCGACCAGCCGGCTCAG
Protein: 466 (aa)
MSSKKPEPLSKGALILQEKPFAYIVKSKFIKERCDFCLSAGKLLKCGGCEFSHYCGVLCQRDAWAEHKYECLCMKKIMPRTLPDAARIMAKIIWKLQYGGYLQKFYYSRSGFRKFNDLMPHLEDIKWDPKRMEHVQSLYMVLKEYLAPEHLPNQTEFLGIYGRLCINSFNILDDDLNSIGTGIYLAASILDHSCRPNAVATFEGPQLSIRLIEDIPELKWEDIRISYVEPLDLPEVRRDELRKAYYFDCECANCRDEKQRAQMVAMACPKEGCDGAIDVMDEKCRECSAEIREEHRATFDDVLDMTRVMLEEMQETRYIDVCRNLVKKQTRVLHDKNIWHLKTLDLAFEAAIDFEAWPEAVVYGEKFVKGLSHYTSPFNPLVGIDHLKLGKIYPHLNEFQTAIHHIREAGEVLKVTHGDQSRLMRDFVRPLLRETQILLEESQRVKLPPPADDDEEEGGEADQPAQ
| Type | Start | End | Length |
| CDS |
629 |
1048 |
420 |
| CDS |
1734 |
2265 |
532 |
| CDS |
2737 |
2899 |
163 |
| CDS |
3028 |
3310 |
283 |
| intron |
1049 |
1733 |
685 |
| intron |
2266 |
2736 |
471 |
| intron |
2900 |
3027 |
128 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002058035 |
GJ15711 [Drosophila virilis] gb|EDW66143.1| GJ15711 [Drosophila virilis] |
1e-121 |
| InterPro |
IPR002893 |
Zinc finger, MYND-type |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF00856.23 |
SET domain |
9.3e-05 |
| Pfam |
PF01753.13 |
MYND finger |
6.1e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000385380 |
| H. sapiens |
ENSP00000444184 |
| A. aegypti |
AAEL003674 |
| D. plexippus |
DPOGS208817PA |
| P. humanus |
PHUM489090-PA |
| M. musculus |
ENSMUSG00000026603 |
| D. melanogaster |
FBgn0011566 |
| H. sapiens |
ENSP00000419184 |
| H. melpomene |
HMEL015094-PA |
| P. vanderplanki |
Pv.03695 |
| M. musculus |
ENSMUSG00000055067 |
| T. castaneum |
TC004426 |
| A. mellifera |
GB11618-PA |
| S. invicta |
SI2.2.0_04563 |
| H. sapiens |
ENSP00000355924 |
| H. sapiens |
ENSP00000408122 |
| H. sapiens |
ENSP00000375712 |
| A. gambiae |
AGAP008954 |
| S. invicta |
SI2.2.0_01274 |
| H. sapiens |
ENSP00000388682 |
| B. mori |
BGIBMGA007923-TA |
| H. sapiens |
ENSP00000373637 |
| C. quinquefasciatus |
CPIJ802401 |
| N. vitripennis |
NV24445-PA |