MidgeBase gene description page [Pn.08039]
Outline
| Gene ID | Pn.08039 |
| Type | Protein coding gene |
| Scaffold | PnScaf7576 |
| Start | 10090 |
| End | 12880 |
| Direction | + |
Sequence
Transcript: 1989 (bp)
ATGTATACGTCAAAGTTTAGAGTTTGCAGAATCTTGTTTATTGCCGGCTCGGTGTGGATCTGCACGGTGCTGACGCTCTTCTACTACTGGGAACTCATCATGGAGCACCAGCTGCGGGCGCAGAAATTCTCAAAAAACCCAACCGATGATAACTTAGTCAATTTTCAAAGGTTGGAGGCCGAGCCGCGTGCTGAGCCAGCGCCCACCACTAAAATTCCCTTTTACGTCACGAAAAAGCGGCAAGTCATGACTTTGAAGGAGCACACAACGACACGGGAAGCGACCACCACCTCAAGCACTACGTCACCTGCCACTACAACGACGACCTCGACGACTGTCAGAAAAACAACAACAACGACGCCTAAGCGACGAATGTACGAGCGCGTTGTCGCGACAATTTCGCCCGAGGTCTACAAGACACTGGGACTGGGCGAGAACCCAGGCGAGGCCGGTCGTCCCATCAAGATCTCAGACCCGCCGGCCGACATCAAGAAGAAGATCGAAGACGGCTGGGCACGCCACGAATTCAACGAGTTCCTCTCGGACCTGATCTCAGTCAACCGGAGCGTGCCCGATCCGCGGTCCATGTACTGCCGAAAGGAGGGGCTCTACCTCAACGAGCTGCCCACGACCTCGGTCATAATTATCTTCCACAACGAGGCATGGTCGACCTTGTTGAGGAGTGTTCACTCCGTCATTAACAGATCTCCTCCCCACCTAGTTAAGGAAATTATTTTAGTCGATGATTATTCAAATATGTTGCATTTGAAGGAGGCCCTCGAGGACTACATGTCTGACTTTCCGAAAGTTCGAATCGTCCGCATGGAGAAGCGCGTCGGACTCATCAAGGCGAGAATTGCAGGCACAAACGCTGCAACTGCACCGACGCTTACGTTCCTCGACTCGCACATTGAGTGCGCCGAAGGCTGGCTCGAACCGCTGCTCGACCGAATCGCGAGGGACAAAACGAAGGTCGTTTGCCCCGTGATCGACGTAATTGACGATGACACGCTGGGCTTTAGCTATCAGGATTCGAGCGGCCTGCAAGTCGGCGGCTTCGACTGGGAAATGACGTTCGACTGGCACATGGTGCCGTCGCGGGAGCGAAAGCGAAAGAAGGATCAGTCGGAGCCGACATTCTCGCCGACAATGGCGGGCGGATTGTTCTCGATAGACAAGGCCTTTTTCGAGCGATTAGGAACGTACGATGATGGATTCGATATTTGGGGTGCGGAGAATCTCGAGCTGAGCTTCAAGACGTGGATGTGCGGCGGAACTTTGGAGATAATTCCGTGCTCGCACGTCGGGCACATCTTCCGGAAGAAATCCCCTTACAAATGGCGCCCAGGTGTCGATGTGCTCAAAATTAATACCGTGCGCTTGGTGGAGGTTTGGCTTGACGAATACTCGCGCTACTACTATGTGCGGCGCGGCAGCCACAAGGGCGACTTTGGCGACATTTCGAAGCGCGTCGAGCTGCGCAAGAACCTCAACTGCAAGAGCTTCAAGTGGTACCTCGAAAATGTGTGGCCCGAAATGACCGTGCCTGACAACATCGCCGAGGGCTGGATTCGAAGCAAGGGCATCAACAATCCGACGTGCTTTGATGCCGCATTTGAAAATCACGATTCGACCTCGAGAATCGCCTTCTACGGCTGTCACGACTACGGTGGCAATCAGTTCTTTGAGTTCTCGACGAAGCACGAGATCAAGAGAAAGCGACATTGCCTCGATTATTCGAACAGCACCAACGAGTTGAAGTTTGTGCTTTGCCACGGTGCCAAAGGCGACCAGTACTGGGACATTGATGTGGAAACGCGACAAATTTACCACCGGGCATCCAACAAGTGCCTCGAGATCTTCAAAAACAACTACCAGTACGAGCCGACGATGCAGGAGTGCGACGAGAAAAACAACAATCAAAAGTGGGACTTTCAGTATTTGTACGAGGAGAAGTTGTTGGGAAGCAATAAAACGACCGTTGCGGTT
Protein: 663 (aa)
MYTSKFRVCRILFIAGSVWICTVLTLFYYWELIMEHQLRAQKFSKNPTDDNLVNFQRLEAEPRAEPAPTTKIPFYVTKKRQVMTLKEHTTTREATTTSSTTSPATTTTTSTTVRKTTTTTPKRRMYERVVATISPEVYKTLGLGENPGEAGRPIKISDPPADIKKKIEDGWARHEFNEFLSDLISVNRSVPDPRSMYCRKEGLYLNELPTTSVIIIFHNEAWSTLLRSVHSVINRSPPHLVKEIILVDDYSNMLHLKEALEDYMSDFPKVRIVRMEKRVGLIKARIAGTNAATAPTLTFLDSHIECAEGWLEPLLDRIARDKTKVVCPVIDVIDDDTLGFSYQDSSGLQVGGFDWEMTFDWHMVPSRERKRKKDQSEPTFSPTMAGGLFSIDKAFFERLGTYDDGFDIWGAENLELSFKTWMCGGTLEIIPCSHVGHIFRKKSPYKWRPGVDVLKINTVRLVEVWLDEYSRYYYVRRGSHKGDFGDISKRVELRKNLNCKSFKWYLENVWPEMTVPDNIAEGWIRSKGINNPTCFDAAFENHDSTSRIAFYGCHDYGGNQFFEFSTKHEIKRKRHCLDYSNSTNELKFVLCHGAKGDQYWDIDVETRQIYHRASNKCLEIFKNNYQYEPTMQECDEKNNNQKWDFQYLYEEKLLGSNKTTVAV
| Type | Start | End | Length |
| CDS |
10090 |
10793 |
704 |
| CDS |
11038 |
11093 |
56 |
| CDS |
11163 |
11476 |
314 |
| CDS |
11873 |
12026 |
154 |
| CDS |
12117 |
12877 |
761 |
| intron |
10794 |
11037 |
244 |
| intron |
11094 |
11162 |
69 |
| intron |
11477 |
11872 |
396 |
| intron |
12027 |
12116 |
90 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_725602 |
CG30463, isoform A [Drosophila melanogaster] ref|NP_001097342.1| CG30463, isoform D [Drosophila melanogaster] sp|Q8MRC9.2|GALT9_DROME RecName: Full=Putative polypeptide N-acetylgalactosaminyltransferase 9; Short=pp-GaNTase 9; AltName: Full=Protein-UDP acetylgalactosaminyltransferase 9; AltName: Full=UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 9 gb|AAF57966.2| CG30463, isoform A [Drosophila melanogaster] gb|ABV53823.1| CG30463, isoform D [Drosophila melanogaster] |
0.0 |
| InterPro |
IPR000772 |
Ricin B lectin domain |
|
| InterPro |
IPR001173 |
Glycosyl transferase, family 2 |
|
| Pfam |
PF02709.9 |
N-terminal domain of galactosyltransferase |
3.6e-07 |
| Pfam |
PF00535.21 |
Glycosyl transferase family 2 |
9.3e-31 |
| Pfam |
PF13333.1 |
Integrase core domain |
0.055 |
| Pfam |
PF10111.4 |
Glycosyltransferase like family 2 |
0.0003 |
| Pfam |
PF00652.17 |
Ricin-type beta-trefoil lectin domain |
2.9e-24 |
| Pfam |
PF14200.1 |
Ricin-type beta-trefoil lectin domain-like |
0.00054 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.10199 |
| B. mori |
BGIBMGA005279-TA |
| P. humanus |
PHUM170220-PA |
| A. aegypti |
AAEL001121 |
| C. quinquefasciatus |
CPIJ005699 |
| P. vanderplanki |
Pv.13649 |
| C. quinquefasciatus |
CPIJ005695 |
| A. aegypti |
AAEL008252 |
| T. castaneum |
TC005479 |
| N. vitripennis |
NV13453-PA |
| C. quinquefasciatus |
CPIJ005698 |
| C. quinquefasciatus |
CPIJ005697 |
| P. vanderplanki |
Pv.13831 |
| S. invicta |
SI2.2.0_06269 |
| H. melpomene |
HMEL003641-PA |
| D. plexippus |
DPOGS204937PA |
| A. aegypti |
AAEL001151 |
| A. mellifera |
GB13681-PA |
| D. melanogaster |
FBgn0050463 |
| A. gambiae |
AGAP012253 |
| A. aegypti |
AAEL001146 |
| A. gambiae |
AGAP006881 |
| A. aegypti |
AAEL001122 |