MidgeBase gene description page [Pn.08038]
Outline
| Gene ID | Pn.08038 |
| Type | Protein coding gene |
| Scaffold | PnScaf7576 |
| Start | 7428 |
| End | 9742 |
| Direction | + |
Sequence
Transcript: 1716 (bp)
ATGATTCGAATTGGTCGCATAGTTCGGAATTTACTAAAATTTCTCATTGTCTGCTGCTCGCTATGTGTAACCGTCATCATTCTCTCTTACTATCCTGAAACGGAGCGCGTAAGCGCGCGCAAAAAGCACCTCGACGAGGGAGTCACGCTGCAGCTCGTCGCGAAACTTAAAGACTTTCACGAGTGGATTGTAAAGCCGCCGGAAAACGTGTTCGGAAGCGACGCCGTCGTCGGAGAGTTGGGAGCGGCCGTGAGTCTGCCAAAGCACCTTCCCGAGCGCATAAAGACGCTCGTCGAGGACGGCTGGGAGCGGCATCAGTTCAACCAGTATGTGTCCGACTTAATTTCGGTTAATCGCAGTCTCAGCGACTTCCGCAGCGAGTCGTGCAAGTCAACGTGGTTGAGGACCAACTTTCCGCCCTCTCTACCCAAAACTGCCGTCATTATCACCTTCTACAACGAAGCGTGGTCGACGTTGCTGCGAACCGTACACTCCGTGCTCAACCGTGGCGGAAATTACGTGCAAGAAGTCGTTTTGGTCGACGACCATTCGACCATGCTCCATCTCAAGGAGCCGCTCGAAAAGTACATGAAGAAGCTCCCGAAAGTTCGCATCATTCGCACGGAGGAGCGGGTGGGATTGATTAGAGCCCGCATTTTGGGCGTCAAATCCTCGACTGCCCCGGTGCTGACTTTTCTCGACTCGCACGTCGAGTGTGCCGAAGGATGGCTCGAGCCGCTGCTCGCGAGAATCGCGAAAAATTCGTCGACAGTCGTGAGTCCAGTGATTGACATCATCGACGACAAGACGTTCGAGTTTCAGTGGATCAAGGACCCGAACTCAATTCCCATCGGCGGCTTCGACTGGCGGCTCGGCTACAAGTGGGTCAATACGTTCGAGGAGCGAGGCGATGTGTCTCTTCCGCTGGAGACTCCGGCAATTGCAGGCGGCTTGTTTTCAATTAGTCGGTCGTTCTTTGAGAGACTTGGGATGTACGATGATCAGCTGGAGCTGTGGGGTGGCGAGAATTTTGAGCTGAGCTTCAAGACATGGATGTGCGGCGGTAGCTTGGAGATCCACCCGTGCTCGCATGTGGGACACGTCTTTCGCACGAAATCTCCCTACGAGTCGAGCGAGGGAAAAGTTGCCATCAAGAAGAATCTAATTCGAGTATCTCAAGTGTGGATGGATGAGTATGCAAAGTTCTTCCTCATGAGAATTCATGCACAGGAAAGTGATTTCACGGATGTCACGGCGCGTCGCGCTCACCGAGCGAGGTTGCGGTGTCGGGACTTTAAGTGGTATCTCGAGAGCGTTTATCCGACCCAGTTCGATCCGGCCCTGGCGCCCGCCCAAGGCAAGCTCAAGAGCGTCAAGTTCGGCGGCATGTGCGTCGCGATGACACCGACGATCGTCAAGCTCGACACCTGCCAGCACCTCATTGAGCAGTTCATCGTGCTGACCATCAACGGCGAGCTGCGGCGCGACGATTTTTGTGTCTCGAGTCACCGGAATGGTGCGATCAAGTACAGCTACTGCATCGGCCTCGAGTCGGAGCGCGTGTGGACGTTTTCGAGAGAAACAAACCTGCTGCACCACGGCACCACCCGAAAGTGCCTCGCCGTCGATTCCGAGCACAATTTAGTGCTGCTCGAATGTAACGAATTGGCGGCGGAGCAACGATGGACCTTCGAGTACTTGAAAAGCATTCACTAC
Protein: 572 (aa)
MIRIGRIVRNLLKFLIVCCSLCVTVIILSYYPETERVSARKKHLDEGVTLQLVAKLKDFHEWIVKPPENVFGSDAVVGELGAAVSLPKHLPERIKTLVEDGWERHQFNQYVSDLISVNRSLSDFRSESCKSTWLRTNFPPSLPKTAVIITFYNEAWSTLLRTVHSVLNRGGNYVQEVVLVDDHSTMLHLKEPLEKYMKKLPKVRIIRTEERVGLIRARILGVKSSTAPVLTFLDSHVECAEGWLEPLLARIAKNSSTVVSPVIDIIDDKTFEFQWIKDPNSIPIGGFDWRLGYKWVNTFEERGDVSLPLETPAIAGGLFSISRSFFERLGMYDDQLELWGGENFELSFKTWMCGGSLEIHPCSHVGHVFRTKSPYESSEGKVAIKKNLIRVSQVWMDEYAKFFLMRIHAQESDFTDVTARRAHRARLRCRDFKWYLESVYPTQFDPALAPAQGKLKSVKFGGMCVAMTPTIVKLDTCQHLIEQFIVLTINGELRRDDFCVSSHRNGAIKYSYCIGLESERVWTFSRETNLLHHGTTRKCLAVDSEHNLVLLECNELAAEQRWTFEYLKSIHY
| Type | Start | End | Length |
| CDS |
7428 |
8447 |
1020 |
| CDS |
8958 |
9109 |
152 |
| CDS |
9196 |
9739 |
544 |
| intron |
8448 |
8957 |
510 |
| intron |
9110 |
9195 |
86 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002026618 |
GL11821 [Drosophila persimilis] gb|EDW33587.1| GL11821 [Drosophila persimilis] |
1e-138 |
| InterPro |
IPR000772 |
Ricin B lectin domain |
|
| InterPro |
IPR001173 |
Glycosyl transferase, family 2 |
|
| Pfam |
PF02709.9 |
N-terminal domain of galactosyltransferase |
1.3e-06 |
| Pfam |
PF13641.1 |
Glycosyltransferase like family 2 |
3.8e-05 |
| Pfam |
PF00535.21 |
Glycosyl transferase family 2 |
5.6e-32 |
| Pfam |
PF10111.4 |
Glycosyltransferase like family 2 |
2.4e-07 |
| Pfam |
PF00652.17 |
Ricin-type beta-trefoil lectin domain |
1.5e-10 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.10198 |