MidgeBase gene description page [Pn.08014]
Outline
| Gene ID | Pn.08014 |
| Type | Protein coding gene |
| Scaffold | PnScaf7556 |
| Start | 1736 |
| End | 3792 |
| Direction | - |
Sequence
Transcript: 1857 (bp)
ATGAGGCTCTTATTGCTGCTATTGACAGCGTGCTTGACTGATTGCCATAAAATTGCCGTAAATCAACCGTCAGTGCATGAAAACCTCGCGAAAGCCACGGCAATCATGATTGAGAGGACTTACTTCAACCTCCAGCCGCACATTACCGTCGTCAAGTCGATAAGCGACAAAAATTTGCGAAAATTCTTCGAAATTTTCACAGCTCTCGTCGAGTCCTTCAACCAGACTTTCACGTTCCACCTCGAAGACGCACGAACGCTGAAGCCGTTGCAGGACAGACGTCGGTCCAACATTTTCTTCATCGACTCAGCCGAGACGTTCGACGAAATTTGCCGGCAGCTCCTCTACGACAACTTCAAGATGCGCAAGCTCTTCACCGTCATCTCCATCAGCGTCCTCGAGAGCGCCGAAATGAGCAAAATTTTCGACTGCTTCTTCGAGCGCTTGGTAATCGATGCAGCCATCATCGCACATGACGCTAACAAGACTGTCAACCTGTTCACATTCTTTCCATATCGCAGCGCAATTGAATGCGACAATACGAATCCCATTAAGGTCAACTCGTTCGGCGCGCGACGATGGAGTCACGAAAAATTCTACTACCGACGATCGAACGATCTCAAAGGCTGCCCTTTGCGCATCGGCGCGGCAGCTGTTACGGGCGAGCCAGCTGTTATGCACAGAAATCTATCGAACGGTCAGACGGAGCTGTTGGGCATAGAGAAAGAAATTTTTATGGAGTTCGCGCGCCTCCTCAATTTCACGCCTGACTTTAAAATTTACTTCGAGTCGATCGGAACAGTCTTCGTCAATGGCACGGGAATTCGAGTGCTGGGAAGAGTGCGCGATAATCTCATCGACACTGCGATCGGATTTAATTCACTGCAGTATGAGAGGACGCTGTTTTTGAGCGAGACCAAGCACTACGCGATGAACAATCTTGCGATCGTTATGATAATTTTGTCTTCTCTTTGCGCAGTTCCGAAAGGCGAAGAGTACGGGGACATGGAGAAGTTGCTTCGACCCTTCTCGCTTCCCGTCTGGCTGTGTCTGCTCGTGATCTTTCTCATCTCATCGATTCTGTCGCTGACTTTCCTCAAAGTTCCAATCGTCTACAACTTTGTGGTCGGACGCGAAGTCAAACATCCCTTCACGAGCATCATAGCAATCCACTTGGGTGTGTCGCAGCCGAAGTTGCCGATGCGAAACTTTTCGAGATTTATTCTGATGAATTTTCTCGTTTATTGCCTCATTTTGCGGTCATCTTATCAAGGCGCAGTCTACAACATTCTCATGTCGGACGATCGAAAGCCACCAGCGTATTTCATTGATCAAATGATGGAGAAGAACTTCAAGTTTTACGTTTTCGAATCGTTGGCGGGACGCTTAAAGGCCTTTGCTGCTGAGTTTCCATTTCACAAAAACATTCGAGTTTTCCCGAACGCCGAGATCGACACTTACCGGAGGAAAACGCTGCAAGACGGCTTCAAGGGTGCAGTCTTCAACTACGAGAATCAAATTCACTTCTTGAATTGGGTCAATGCCAAGAACTATACCTTCACAATAGCTAAGGAACGAATGTACACTACGCCATTTGTCTTTTATTTTCGCAAAAATCATTTTCTCGTGAGCGACATAAATTCCTACCTCGAACGAATGCACGCCAATGGCTTAATTGATTTCATATCATCGAGATATGCCGACAAAGGAGGCTTGAAAACGAAGCCGGATGAGGGACCGAGAGCTCTGCAGATTAAGCATATTTATGGTGCAACTGAAGTTTATTTCCTCTGCAATCTCATCGCCGTTGTCATTTTCATAATGGAATTAGTTACAAAACTGCGATTGTATTGGCGA
Protein: 619 (aa)
MRLLLLLLTACLTDCHKIAVNQPSVHENLAKATAIMIERTYFNLQPHITVVKSISDKNLRKFFEIFTALVESFNQTFTFHLEDARTLKPLQDRRRSNIFFIDSAETFDEICRQLLYDNFKMRKLFTVISISVLESAEMSKIFDCFFERLVIDAAIIAHDANKTVNLFTFFPYRSAIECDNTNPIKVNSFGARRWSHEKFYYRRSNDLKGCPLRIGAAAVTGEPAVMHRNLSNGQTELLGIEKEIFMEFARLLNFTPDFKIYFESIGTVFVNGTGIRVLGRVRDNLIDTAIGFNSLQYERTLFLSETKHYAMNNLAIVMIILSSLCAVPKGEEYGDMEKLLRPFSLPVWLCLLVIFLISSILSLTFLKVPIVYNFVVGREVKHPFTSIIAIHLGVSQPKLPMRNFSRFILMNFLVYCLILRSSYQGAVYNILMSDDRKPPAYFIDQMMEKNFKFYVFESLAGRLKAFAAEFPFHKNIRVFPNAEIDTYRRKTLQDGFKGAVFNYENQIHFLNWVNAKNYTFTIAKERMYTTPFVFYFRKNHFLVSDINSYLERMHANGLIDFISSRYADKGGLKTKPDEGPRALQIKHIYGATEVYFLCNLIAVVIFIMELVTKLRLYWR
| Type | Start | End | Length |
| CDS |
1739 |
2171 |
433 |
| CDS |
2233 |
2704 |
472 |
| CDS |
2841 |
3792 |
952 |
| intron |
2172 |
2232 |
61 |
| intron |
2705 |
2840 |
136 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001656710 |
hypothetical protein AaeL_AAEL003335 [Aedes aegypti] gb|EAT45392.1| conserved hypothetical protein [Aedes aegypti] |
2e-36 |
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
1.6e-05 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
0.061 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.08945 |