MidgeBase gene description page [Pn.07941]
Outline
| Gene ID | Pn.07941 |
| Type | Protein coding gene |
| Scaffold | PnScaf7477 |
| Start | 990 |
| End | 1649 |
| Direction | + |
Sequence
Transcript: 504 (bp)
ATGGTAAAGCCAAATATATTAGTAACTGGCACGCCAGGTGCCGGGAAAACGCATTTTGCTAAAAGAATTGCTGAGGAAAATGGAATGAGATTTTTAGAGATCAGTAGAATCGTGCAGGACAATGACTTCTTCGATGGCTTTGATGAAACACTTAACTGTCCAATTCTTGATGAAGATAAGTTGCTTGATTATCTTGAGCCGCTCATGAATGAGGGAAACAACGTGGCCGAGTACCATTCGTCAGAATTCTTTCCCGAGCGTTGGTTCCAAACAGTGTACGTCGTTCGATGCAACACTGATGTCCTCTTCAAAAGACTCGAAGAGCGTGGATATAATGCCAAAAAAATTCAGAATAATGTAGAGTACGAGATATTTCAAGTCGCTCTTGATGAGGCGAAAAATTCCTACAAGCCAGAAATAGTTTATGAGGTTCGAGGAGAAACAGAGGAGCAGTTAGAAGAGAACCTTAAACTTGTCGGTGAATTTGTTAACAATTTTGAGGAA
Protein: 168 (aa)
MVKPNILVTGTPGAGKTHFAKRIAEENGMRFLEISRIVQDNDFFDGFDETLNCPILDEDKLLDYLEPLMNEGNNVAEYHSSEFFPERWFQTVYVVRCNTDVLFKRLEERGYNAKKIQNNVEYEIFQVALDEAKNSYKPEIVYEVRGETEEQLEENLKLVGEFVNNFEE
| Type | Start | End | Length |
| CDS |
990 |
1026 |
37 |
| CDS |
1092 |
1234 |
143 |
| CDS |
1323 |
1646 |
324 |
| intron |
1027 |
1091 |
65 |
| intron |
1235 |
1322 |
88 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663851 |
coilin-interacting nulcear ATPase protein, putative [Aedes aegypti] gb|EAT34059.1| coilin-interacting nuclear ATPase protein, putative [Aedes aegypti] |
2e-55 |
| Pfam |
PF13207.1 |
AAA domain |
1.9e-12 |
| Pfam |
PF01202.17 |
Shikimate kinase |
0.00082 |
| Pfam |
PF05729.7 |
NACHT domain |
0.0039 |
| Pfam |
PF08433.5 |
Chromatin associated protein KTI12 |
0.023 |
| Pfam |
PF12846.2 |
AAA-like domain |
0.00083 |
| Pfam |
PF06414.7 |
Zeta toxin |
0.0022 |
| Pfam |
PF02367.12 |
Uncharacterised P-loop hydrolase UPF0079 |
0.099 |
| Pfam |
PF01695.12 |
IstB-like ATP binding protein |
0.0015 |
| Pfam |
PF00910.17 |
RNA helicase |
0.022 |
| Pfam |
PF13245.1 |
Part of AAA domain |
0.003 |
| Pfam |
PF00406.17 |
Adenylate kinase |
0.018 |
| Pfam |
PF06745.8 |
KaiC |
0.046 |
| Pfam |
PF13401.1 |
AAA domain |
0.0021 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.013 |
| Pfam |
PF09994.4 |
Uncharacterized conserved protein (DUF2235) |
0.13 |
| Pfam |
PF01580.13 |
FtsK/SpoIIIE family |
0.12 |
| Pfam |
PF13521.1 |
AAA domain |
0.0011 |
| Pfam |
PF09848.4 |
Uncharacterized conserved protein (DUF2075) |
0.06 |
| Pfam |
PF13671.1 |
AAA domain |
4.6e-06 |
| Pfam |
PF08990.6 |
Erythronolide synthase docking |
1 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
6.6e-06 |
| Pfam |
PF01078.16 |
Magnesium chelatase, subunit ChlI |
0.039 |
| Pfam |
PF13238.1 |
AAA domain |
2.2e-20 |
| Pfam |
PF01443.13 |
Viral (Superfamily 1) RNA helicase |
0.0096 |
| Pfam |
PF13173.1 |
AAA domain |
0.044 |
| Pfam |
PF05496.7 |
Holliday junction DNA helicase ruvB N-terminus |
0.051 |
| Pfam |
PF02492.14 |
CobW/HypB/UreG, nucleotide-binding domain |
0.12 |
| Pfam |
PF03266.10 |
NTPase |
0.032 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV16667-PA |
| H. sapiens |
ENSP00000370197 |
| D. plexippus |
DPOGS215735PA |
| C. quinquefasciatus |
CPIJ009933 |
| A. aegypti |
AAEL014722 |
| D. melanogaster |
FBgn0033754 |
| A. mellifera |
GB16979-PA |
| H. sapiens |
ENSP00000461237 |
| B. mori |
BGIBMGA003609-TA |
| P. vanderplanki |
Pv.01095 |
| A. aegypti |
AAEL013679 |
| H. sapiens |
ENSP00000459871 |
| H. sapiens |
ENSP00000370201 |
| P. humanus |
PHUM506210-PA |
| H. melpomene |
HMEL004069-PA |
| M. musculus |
ENSMUSG00000078941 |
| A. gambiae |
AGAP000272 |