MidgeBase gene description page [Pn.07940]
Outline
| Gene ID | Pn.07940 |
| Type | Protein coding gene |
| Scaffold | PnScaf7476 |
| Start | 11221 |
| End | 14208 |
| Direction | + |
Sequence
Transcript: 1497 (bp)
ATGCGTGAAATATTCGTAGAAAAATCGTACGAGGATGCTTCGATCCTCATCACCGGTTCTACTGGATTTCTCGGAAAAGTTTTGGTTGAAAAAGTATTGAGACAATGCAGAAGTATAAAACGAGTTTACGTTTTACTGAGACCGAAGAAGGGCGACGAGATTGGGAAAAGATTCGAAAATTTTAAAAATTTAATAATTTTCAATAAGCTAAAAAAGAGTGACCCGAAGGTGTTTGAAAAGTTAATAGCAATCGAGGGTGATTTGATGGAGGAGAAGTTGGGAATATCGAAAAGTGACGAAGAAATTTTGCAGAAAAATCTTAATTTCATTATACATTGTGCAGCGAGTGTCAAGTTTGATGAACCTATAAAAATTGCATTAAAAATGAACACCATAAGCACGCAAAAACTGCTAACGCTAGCGGAAAGGTGTGAAAACCTCAAAGGCTTTGTACATGTGTCAACGGCTTTTTCCAACACAAACCAGTCTATGATCTATGAGAAAATTTACGAGCCTATTTGCGACTACAAGCATGTAATTTCGCTTGTGGAAAATGACAATGATGAAGAGTTGGAGAAAATTCGAGAAATTGGTATGAAAACATTTCCCAACAATTACATCTTCACCAAAAATCTCACGGAGAAGCTCGTTTCGGACTACACGCATCTTCCAATTACAATTGTAAGACCTTCAATCGTCTGTCCTTCACATAATGAGCCGGAGTTAGGCTGGGTGGACAGCTTAAATGGACCAATGGGTGTGCTTCTTGGTGCAAGTTCAGGAATTTTGCGGACCGTTCATGGCAATGGGGATCTACAGTGCGATCTTATCCCATGCGATTTTGTGACTAATTGCATTATTGCTGCAGGTGCTTCGATTGGATCAAGTCCAACAAAAGCTTTGGAAATCTACAACTGCACTTCGAGCGAACAAATGCCTATAACATGGAATCAGTTTCTAGATCTTGGTCGAGAAATTTACATGAAGTATCCATCAACGAAAGCACTTTGGTATCCAGGTGGAAGAATGTGTGCCAGCTACTACGGCTATCTGATTTACTTTACTCTTTTCCAATTCATTCCCGCGATTTTCATAGACGTTTTTGCAGTTTTGGCTGGAAGAAAGAGATGGGCGATTAAGCTTCAAATGAGAATTTTCGATTCGCTTAAAGTTTTTGCATACTTTCTCAATAATTCATGGCTTTGGTCGAGTAAAAACTTTCAACTTCTTTTTCAACGCATTAACGTCGAGGAAAGGAAAAACTTTAATTTTGATATTTCAACTCTAGACTTTAAGCAATATGTTGAGAATTGGGTTATCGGTTCTAGACGTTTTATAATGAAGCTTGATGACAAAAGTATTCCTGACGCAAAACGAAAATTTGTTTTTTTGTTCTGGTTAGACTTTATTGTTAAAACGATCTTTGTTGGAGGGCTTATCGTTTTCTTAATTCACACGTGTTCCAGAATCACAATTAAACCTGTAATAAAGATGTCC
Protein: 499 (aa)
MREIFVEKSYEDASILITGSTGFLGKVLVEKVLRQCRSIKRVYVLLRPKKGDEIGKRFENFKNLIIFNKLKKSDPKVFEKLIAIEGDLMEEKLGISKSDEEILQKNLNFIIHCAASVKFDEPIKIALKMNTISTQKLLTLAERCENLKGFVHVSTAFSNTNQSMIYEKIYEPICDYKHVISLVENDNDEELEKIREIGMKTFPNNYIFTKNLTEKLVSDYTHLPITIVRPSIVCPSHNEPELGWVDSLNGPMGVLLGASSGILRTVHGNGDLQCDLIPCDFVTNCIIAAGASIGSSPTKALEIYNCTSSEQMPITWNQFLDLGREIYMKYPSTKALWYPGGRMCASYYGYLIYFTLFQFIPAIFIDVFAVLAGRKRWAIKLQMRIFDSLKVFAYFLNNSWLWSSKNFQLLFQRINVEERKNFNFDISTLDFKQYVENWVIGSRRFIMKLDDKSIPDAKRKFVFLFWLDFIVKTIFVGGLIVFLIHTCSRITIKPVIKMS
| Type | Start | End | Length |
| CDS |
11221 |
11952 |
732 |
| CDS |
12398 |
12422 |
25 |
| CDS |
13324 |
13533 |
210 |
| CDS |
13615 |
13903 |
289 |
| CDS |
13965 |
14205 |
241 |
| intron |
11953 |
12397 |
445 |
| intron |
12423 |
13323 |
901 |
| intron |
13534 |
13614 |
81 |
| intron |
13904 |
13964 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003426226 |
PREDICTED: putative fatty acyl-CoA reductase CG5065-like isoform 2 [Nasonia vitripennis] ref|XP_001601849.2| PREDICTED: putative fatty acyl-CoA reductase CG5065-like isoform 1 [Nasonia vitripennis] |
1e-97 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
2.1e-07 |
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
0.0038 |
| Pfam |
PF04321.12 |
RmlD substrate binding domain |
0.0083 |
| Pfam |
PF03015.14 |
Male sterility protein |
3.6e-20 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.00022 |
| Pfam |
PF05368.8 |
NmrA-like family |
0.11 |
| Pfam |
PF07993.7 |
Male sterility protein |
4.8e-66 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06357 |