MidgeBase gene description page [Pn.07927]
Outline
| Gene ID | Pn.07927 |
| Type | Protein coding gene |
| Scaffold | PnScaf7468 |
| Start | 1448 |
| End | 3019 |
| Direction | + |
Sequence
Transcript: 930 (bp)
ATGACCATGAGCTCCGAAAGTAACAAGGAAGCCACCATTAAAAATGGAAATAAGTCTGAGAGGACAACTTCACCGTTATCATCGTCCTCAGCCAAACACCCGACTACTAACGATCTGACTCCTGAGACATCCGACGATGACTTCCAATCGAGGAAGAATATGAATAAACCCAATAAGCCGAAAAGTGAATTTGAAGAAAAAATTCGAGTTGGGAAAGACTATCAAGTTATTGTTCCGGAAATGATTGGAATTCATCCGAAAATGGAAAGCTATCACGATAAAGCATTGCTGGTTTGGTCACCGGTCAAGGACATAAGTGAGGAACGATTAGATGAATACATTATGCTGGCACAACAAAAATATGGCTACAATGCTGAACAGGCTTTGGGAATGCTCTTTTGGCATAAGCACGATCTTCAAAAGGCTGTAATGGACTTACAGAACTTTACCCCATTTCCTGATGAATGGACAAAAGAGGATAAAATTCTCTTTGAACAGGCTTATGCTTTTCATGGGAAGTGCTTTCATCGTATCAGGCAAATGCTACCAGACAAGTCTATAGCGAGTTTAGTAAAATTTTATTACTCGTGGAAAAAAGCAAGAACTCGTTCCAGTACGGAGCGTCAAGAGAAGAAAAAGCACGATGGAAACGGTTCTGAGAATGGCAGCGAAAATGGTGGCGGCAGCCCAAACGACTCTGATCTTGAAGAGAAGCATGATTCAGAAATAGGTGACATTGAGGAGATAATTGGAATCAATAAGGACAGTACGACGGGACAAAGTAAATCGAACAAAACAAGCATTATGACGACCAGTAATAAGTCAATTAAGCGTAAGCATGACGAAGAAGCATCCATCGCAAATGACAATGTTGAGGCTTCGAAAAAATTGACAACTGAAAAGTTACTGAAACCCGAAGTCACAATCACA
Protein: 310 (aa)
MTMSSESNKEATIKNGNKSERTTSPLSSSSAKHPTTNDLTPETSDDDFQSRKNMNKPNKPKSEFEEKIRVGKDYQVIVPEMIGIHPKMESYHDKALLVWSPVKDISEERLDEYIMLAQQKYGYNAEQALGMLFWHKHDLQKAVMDLQNFTPFPDEWTKEDKILFEQAYAFHGKCFHRIRQMLPDKSIASLVKFYYSWKKARTRSSTERQEKKKHDGNGSENGSENGGGSPNDSDLEEKHDSEIGDIEEIIGINKDSTTGQSKSNKTSIMTTSNKSIKRKHDEEASIANDNVEASKKLTTEKLLKPEVTIT
| Type | Start | End | Length |
| CDS |
1448 |
1592 |
145 |
| CDS |
1687 |
1737 |
51 |
| CDS |
2093 |
2284 |
192 |
| CDS |
2353 |
2507 |
155 |
| CDS |
2564 |
2734 |
171 |
| CDS |
2801 |
3016 |
216 |
| intron |
1593 |
1686 |
94 |
| intron |
1738 |
2092 |
355 |
| intron |
2285 |
2352 |
68 |
| intron |
2508 |
2563 |
56 |
| intron |
2735 |
2800 |
66 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001652381 |
rest corepressor (corest) protein [Aedes aegypti] gb|EAT47759.1| rest corepressor (corest) protein [Aedes aegypti] |
2e-72 |
| InterPro |
IPR001005 |
SANT/Myb domain |
|
| InterPro |
IPR000949 |
ELM2 domain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| InterPro |
IPR017884 |
SANT domain |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF08648.7 |
Protein of unknown function (DUF1777) |
3.3 |
| Pfam |
PF00249.26 |
Myb-like DNA-binding domain |
9.5e-06 |
| Pfam |
PF01448.19 |
ELM2 domain |
1.1e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM256790-PA |
| T. castaneum |
TC007336 |
| H. sapiens |
ENSP00000436838 |
| M. musculus |
ENSMUSG00000037395 |
| A. aegypti |
AAEL001126 |
| S. invicta |
SI2.2.0_08490 |
| H. sapiens |
ENSP00000355973 |
| H. sapiens |
ENSP00000301459 |
| D. plexippus |
DPOGS211367PA |
| H. sapiens |
ENSP00000432779 |
| A. mellifera |
GB17956-PA |
| A. gambiae |
AGAP002488 |
| H. sapiens |
ENSP00000398558 |
| C. quinquefasciatus |
CPIJ009982 |
| M. musculus |
ENSMUSG00000024968 |
| B. mori |
BGIBMGA008364-TA |
| D. melanogaster |
FBgn0261573 |
| N. vitripennis |
NV18128-PA |
| P. vanderplanki |
Pv.12017 |
| H. melpomene |
HMEL002792-PA |
| H. sapiens |
ENSP00000355972 |
| P. vanderplanki |
Pv.00194 |
| H. sapiens |
ENSP00000413929 |