MidgeBase gene description page [Pn.07856]
Outline
| Gene ID | Pn.07856 |
| Type | Protein coding gene |
| Scaffold | PnScaf7307 |
| Start | 1357 |
| End | 2897 |
| Direction | - |
Sequence
Transcript: 1191 (bp)
ATGTTTCTTAGCAGATTTTGTCTGCTAATTGCAACTTTAAACAGTATTTTAAATTCTTTTGAATGCGAAAAGATCCCACAATTTGTTATATCGTCTGATGAGTTGACTCTAACTTTGAACGAGACCAAACAGATTCTTCTTCAACTAGAGAAGCCACTTAACCAGAATGTGACCATAACTTTCTCGAAGAATCACCCTGAATTAATAACCCTTGTTCCCGAGGTCTTGACAATCTATAAAAATACTTCGGGAAATTTCAACCTCACTGTGTTCGCGCAATCGCCTGGTCATGTCGATGTCACTGGCAAGGCTACGCCGGCGAGCGTCGTCGACGACTTTAATCTTTTCTTCCGAATCATTGTGGCGAATTCACAGACCCTCATCTTCGTATCGGCCATCGTGGGCTGGGTTTATTTCGTCGCCTGGTCGATTTCCTTCTACCCACAACTGATTAGCAATTGCAAACGCAAGTCCGTCATTGGACTGAGTTTTGATTTTATCGCCCTCAACTTCATGGGTCACACTCTCTATGCCGTCTTCAACACATGTCTTTACTTCGTGCCATTTTTCCAAGACGAATACTTTGCTCGATTCCCACGTGGTCTCAATCCAGTCGAACTCAACGACGTTTTCTTCTCCATCCACGCATCATTTATCACTGCACTGACTGTTTATCAATGCTTTATTTACGAGCGTGGTGAGCAACGAGTCTCAGATGTAGCATGCGCCATAATCGGGATTTTTGCGACAGTTCTGGTGTCAATTACAATTTTGTGCTCAATCGGGAAGGTTCAATGGTTGGATTTCCTCAACACTTGCAGTTACATAAAGTTGGCCATCACTCTTATCAAATACGTGCCTCAGGCCATCTTGAACTACAGGCGGAAATCCACTGTTGGCTGGAGCATCGGAAACATATTGCTGGACTTCACTGGCGGAACTTTATCGATGCTTCAAATGATCTTAAACGCTTACAACTTCAACGACTGGCAGTCGATTTTCGGCGACCCGACCAAATTCGGCCTTGGACTGTTTTCAGTTCTCTTTGATATTCTGTTTATAATTCAACACTATGTGTTGTACAGAAACTTGCAACCATACAGAGCAATACCTGGCAATGAATCAGAAGCTAATTTAACTGAAAAGGACGAAGAGAACATTACGGAAGAGGAAGATGACCAAAACCAGAGT
Protein: 397 (aa)
MFLSRFCLLIATLNSILNSFECEKIPQFVISSDELTLTLNETKQILLQLEKPLNQNVTITFSKNHPELITLVPEVLTIYKNTSGNFNLTVFAQSPGHVDVTGKATPASVVDDFNLFFRIIVANSQTLIFVSAIVGWVYFVAWSISFYPQLISNCKRKSVIGLSFDFIALNFMGHTLYAVFNTCLYFVPFFQDEYFARFPRGLNPVELNDVFFSIHASFITALTVYQCFIYERGEQRVSDVACAIIGIFATVLVSITILCSIGKVQWLDFLNTCSYIKLAITLIKYVPQAILNYRRKSTVGWSIGNILLDFTGGTLSMLQMILNAYNFNDWQSIFGDPTKFGLGLFSVLFDILFIIQHYVLYRNLQPYRAIPGNESEANLTEKDEENITEEEDDQNQS
| Type | Start | End | Length |
| CDS |
1360 |
1465 |
106 |
| CDS |
1571 |
1673 |
103 |
| CDS |
1736 |
2024 |
289 |
| CDS |
2089 |
2632 |
544 |
| CDS |
2689 |
2785 |
97 |
| CDS |
2846 |
2897 |
52 |
| intron |
1466 |
1570 |
105 |
| intron |
1674 |
1735 |
62 |
| intron |
2025 |
2088 |
64 |
| intron |
2633 |
2688 |
56 |
| intron |
2786 |
2845 |
60 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001850022 |
cystinosin [Culex quinquefasciatus] gb|EDS31323.1| cystinosin [Culex quinquefasciatus] |
1e-116 |
| InterPro |
IPR006603 |
Cystinosin/ERS1p repeat |
|
| InterPro |
IPR005282 |
Lysosomal cystine transporter |
|
| Pfam |
PF04193.9 |
PQ loop repeat |
2.7e-37 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.08654 |
| Pn.10506 |
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL006113 |
| H. sapiens |
ENSP00000371294 |
| H. sapiens |
ENSP00000046640 |
| H. melpomene |
HMEL002235-PA |
| A. gambiae |
AGAP004116 |
| A. gambiae |
AGAP004115 |
| P. vanderplanki |
Pv.07124 |
| M. musculus |
ENSMUSG00000005949 |
| P. vanderplanki |
Pv.05671 |
| A. mellifera |
GB15127-PA |
| H. sapiens |
ENSP00000411465 |
| D. melanogaster |
FBgn0039045 |
| N. vitripennis |
NV17817-PA |
| P. humanus |
PHUM105090-PA |
| B. mori |
BGIBMGA000222-TA |
| C. quinquefasciatus |
CPIJ008456 |
| D. plexippus |
DPOGS210114PA |
| T. castaneum |
TC016287 |