MidgeBase gene description page [Pn.07842]
Outline
| Gene ID | Pn.07842 |
| Type | Protein coding gene |
| Scaffold | PnScaf7266 |
| Start | 5820 |
| End | 7850 |
| Direction | + |
Sequence
Transcript: 342 (bp)
ATGGCTCTGTCAAAGATATCGTCGCTTATTCGCCCACTCGGCTCACGCGCCTTCTCGTTGACGCCGCGCGTCTGCAGCGACGCCGGCGGTCCGTCTTTCGGGCTCTCGGACGAGCAGCGCGAGATTCAGGCCGTTGCGCGCAAGTTCACGAAGGAGGAGATCATCCCGGTCGCAGCACACCACGATAAGACCGGCGAGTACCCGTGGGACATCGTGAAGAAGGCATGGGAGCTGGGCCTCATCAACCACGGCATCCCCGAGCACTGCGGCGGCCACAAGCTGTCGATTTTCACGAGCTGTCTCATCGCCGAGGAGCTGGGTGACTTACGGCTGCACCGGCAT
Protein: 114 (aa)
MALSKISSLIRPLGSRAFSLTPRVCSDAGGPSFGLSDEQREIQAVARKFTKEEIIPVAAHHDKTGEYPWDIVKKAWELGLINHGIPEHCGGHKLSIFTSCLIAEELGDLRLHRH
| Type | Start | End | Length |
| CDS |
5820 |
5834 |
15 |
| CDS |
7459 |
7766 |
308 |
| CDS |
7829 |
7847 |
19 |
| intron |
5835 |
7458 |
1624 |
| intron |
7767 |
7828 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADD19384 |
medium-chain acyl-CoA dehydrogenase [Glossina morsitans morsitans] |
5e-29 |
| InterPro |
IPR006092 |
Acyl-CoA dehydrogenase, N-terminal |
|
| InterPro |
IPR013786 |
Acyl-CoA dehydrogenase/oxidase, N-terminal |
|
| InterPro |
IPR009100 |
Acyl-CoA dehydrogenase/oxidase |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
|
| Gene Ontology(MF) |
GO:0050660 |
flavin adenine dinucleotide binding |
|
| Gene Ontology(MF) |
GO:0003995 |
acyl-CoA dehydrogenase activity |
|
| Pfam |
PF02771.11 |
Acyl-CoA dehydrogenase, N-terminal domain |
1e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes