MidgeBase gene description page [Pn.07832]
Outline
| Gene ID | Pn.07832 |
| Type | Protein coding gene |
| Scaffold | PnScaf7265 |
| Start | 86756 |
| End | 87334 |
| Direction | - |
Sequence
Transcript: 435 (bp)
ATGTCTATTGGCGTTCCAATTAAAGTGCTGCACGAGGCAGAGGGTCACATTGTGACTTGTGAGACTATCACTGGCGAAGTCTACAGAGGAAAACTCATCGAGGCGGAGGACAACATGAACTGCCAGATGACTCAAATCACAGTCACCTACAGAGACGGACGAATGGCCAATCTAGAAAACGTTTACATTCGTGGATCAAAAATTCGCTTCATGATTTTGCCCGACATGCTGAAAAACGCGCCGATGTTCAAAAAGCAAGGAACGAAAGCGGGAACGGCGGGCAGAGGCAAATCCGCGATCTTGCGAGCTCAAGCGGCGCGGGGGCGAGGCAGAGGCGGACCGGGCGGCGGTTCTGGCGGTCCAAAACCCGGCGGCTCAGGCGGTGCAAAGTGGCAGCAAGGCGGTCCATCGGGTGGTCGTGGTCGCGGTGGAATC
Protein: 145 (aa)
MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRMANLENVYIRGSKIRFMILPDMLKNAPMFKKQGTKAGTAGRGKSAILRAQAARGRGRGGPGGGSGGPKPGGSGGAKWQQGGPSGGRGRGGI
| Type | Start | End | Length |
| CDS |
86759 |
86880 |
122 |
| CDS |
86940 |
87184 |
245 |
| CDS |
87267 |
87334 |
68 |
| intron |
86881 |
86939 |
59 |
| intron |
87185 |
87266 |
82 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_972583 |
PREDICTED: similar to AGAP012380-PA [Tribolium castaneum] |
7e-57 |
| InterPro |
IPR001163 |
Ribonucleoprotein LSM domain |
|
| InterPro |
IPR006649 |
Ribonucleoprotein LSM domain, eukaryotic/archaea-type |
|
| InterPro |
IPR010920 |
Like-Sm (LSM) domain |
|
| Pfam |
PF01423.17 |
LSM domain |
7.1e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM316110-PA |
| T. castaneum |
TC015424 |
| A. gambiae |
AGAP012380 |
| D. plexippus |
DPOGS206813PA |
| A. mellifera |
GB15805-PA |
| H. sapiens |
ENSP00000215829 |
| A. aegypti |
AAEL011433 |
| H. sapiens |
ENSP00000385266 |
| C. quinquefasciatus |
CPIJ005588 |
| M. musculus |
ENSMUSG00000020180 |
| N. vitripennis |
NV15051-PA |
| H. melpomene |
HMEL017608-PA |
| D. melanogaster |
FBgn0023167 |
| P. vanderplanki |
Pv.10593 |
| B. mori |
BGIBMGA013100-TA |
| H. sapiens |
ENSP00000456090 |
| S. invicta |
SI2.2.0_14465 |