MidgeBase gene description page [Pn.07796]
Outline
| Gene ID | Pn.07796 |
| Type | Protein coding gene |
| Scaffold | PnScaf7192 |
| Start | 1121 |
| End | 2653 |
| Direction | + |
Sequence
Transcript: 849 (bp)
ATGAGTAATCTGCTCTCTCGTTGCGAACAATATTTAGCGTCCGGCGCGAGTGTTTTGCGAACGGCGAAAATCGTTGGCGGCTATTCCGCTGATCACTATCAATTTCCTTATCAAGCATCGCTGCGAACGAGCTTGATGAGCACGCACTTTTGCGGGGCTTTCCTTCTCACCGAGCGATGGCTCATGAGTGCAGGTCATTGCACTGATAAGAGAAAACCGTCCGGTGTCGTTGTGGTCGTCGGAGCATTTACTAGGGCAAAGAATGAGGGCATTAGGCATTCGGTACTCATGCTCGCCACCCATCCCGAATTCGATCCGAAATCACTTCACAATGACATCTCCATGATTAAAACTGAGACGTTTATTGACTTTTCAATCAGCGTACGGCCAGTGCGCTTGCAAGCGATGGCAGTCGAGCAAGACCTCGAGGCTTTCGTGTCGGGCTGGGGCTACACGGACAGCTCGGGTACGAATCCGGAAGTGCTCCAGTGGATCAAGATGAAGACAATTGATCTGAACGAGTGCCGCGAACAAATGAGCAAGCAGAATGCCGAGCGGATCTTCGATACAAACATTTGTGCCATCGCCATGGAGACGACGGGAGGCGCGTGCATGGGCGACAGCGGGGGACCATTAGTGACCGTAGATGGCGCATTGATTGGTATCGTTTCTTGGGGCGTCCCATGCGGCAAAGGCTTGCCCGACGTTTTCACCCAAATATCGCCGTTCAAGGACTGGATTGATGCGACAATCGATTTTCCCGAAGTCGAGGAGGATTACGAGGGCGATTATGAGTACACGTTCGTCGACAGCCATCACGATGCATTTGACTTTGGATTTATGACAATT
Protein: 283 (aa)
MSNLLSRCEQYLASGASVLRTAKIVGGYSADHYQFPYQASLRTSLMSTHFCGAFLLTERWLMSAGHCTDKRKPSGVVVVVGAFTRAKNEGIRHSVLMLATHPEFDPKSLHNDISMIKTETFIDFSISVRPVRLQAMAVEQDLEAFVSGWGYTDSSGTNPEVLQWIKMKTIDLNECREQMSKQNAERIFDTNICAIAMETTGGACMGDSGGPLVTVDGALIGIVSWGVPCGKGLPDVFTQISPFKDWIDATIDFPEVEEDYEGDYEYTFVDSHHDAFDFGFMTI
| Type | Start | End | Length |
| CDS |
1121 |
1313 |
193 |
| CDS |
1376 |
1497 |
122 |
| CDS |
1880 |
2007 |
128 |
| CDS |
2083 |
2246 |
164 |
| CDS |
2312 |
2382 |
71 |
| CDS |
2480 |
2650 |
171 |
| intron |
1314 |
1375 |
62 |
| intron |
1498 |
1879 |
382 |
| intron |
2008 |
2082 |
75 |
| intron |
2247 |
2311 |
65 |
| intron |
2383 |
2479 |
97 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACF19792 |
serine-type enodpeptidase SP [Chironomus riparius] |
2e-46 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF03545.8 |
Yersinia virulence determinant (YopE) |
0.14 |
| Pfam |
PF13365.1 |
Trypsin-like peptidase domain |
0.054 |
| Pfam |
PF00089.21 |
Trypsin |
3.6e-52 |
| Pfam |
PF02906.9 |
Iron only hydrogenase large subunit, C-terminal domain |
0.1 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.00291 |