MidgeBase gene description page [Pn.07788]
Outline
| Gene ID | Pn.07788 |
| Type | Protein coding gene |
| Scaffold | PnScaf7175 |
| Start | 204072 |
| End | 205304 |
| Direction | + |
Sequence
Transcript: 1134 (bp)
ATGTTATCTCGATTACGAGGCTTCGTGTCTCGTCACAAAAAGAAATTCATTGTTGGTGGTGTTGTAATTGCCGCAGGCTTCACGATTAGATATGCTCAAAGGAAGTTTGTCGAATACCAAGAAAAGCAAGTAAAAGAGTTTTTGGAGAAAACGAGGCGTTTGCAACATTTTGAGTCAACAGAAAAGACGACAGATCAGGCGATCATCAACCTGACCACGGGACTGTGTGAGTCAATACTAAAGAATTTGGATACAGAAAGCGTCTTGAACGAACTCCGAACAAAAAGTGACAAAAAATTGGAGCTATGGGAGGAATTGAAAATTCTCTCGTTTTGTCGTTGCACAACATTCGTTTACGCTATTTCCCTGCTAGTTGCAAGCCTTAGAGTACAATTGAACATTATTGGCGGTTATCTTTACAAAGACACGCTCCAGAACACAGAAAAGATCACCAAGGAAATACAAACGGTCTATAGTTTGGTTCTGATTCAGCATCTCATGGGCCATGGACTCAACCAACTCACCAAAGTCATTCGCGAGAATGTTTTTCGAGTGATGAAGAGCCACAGCTTGAAGGAGAAGCTTATGTTGAGCGACGTAGAGCAACTGTTTTGGTCAATACAGCATTCCGTGGATAAGGACATTAACAAGAATTTGGTCCAATTTATTTTGCCAGCTGAAGTTCACCACAATCAGCAAGACGAGATCCTGAATAAAATGCTTGCCGATAGCATGGACGTGTTCGAGTGCGGCGATTTCTTAGATGTATGCGAATCGAGCATTAATAATGCATTTGCCGTTGTGATTGACAAAGTTGCTGACTTTTATGTGGAACCTGCAAATGGCAAGAATAAACTTAATGATGACGAGTCGCAGCCATCACCCTCAACTTCTCGTGGAACCTCTGAAAACATGGTTTTAAATGGCAATGAGCACGTCAACATAAACAAAATATCGTTGCCTCTTGCCAAACTGATTCCAATTCTAAATGGACTCACCGGACAGATACCATTGAGTAATGCCGCTGATAGCAGTAAGTCGTCGAAAAATCTTGCCAGCTCTATTACTATCCTTCAAAGCTTGAATCAACAGTTGAAAACTCTAGGCGCTAATGTCTATGAGGTTTATTCACAT
Protein: 378 (aa)
MLSRLRGFVSRHKKKFIVGGVVIAAGFTIRYAQRKFVEYQEKQVKEFLEKTRRLQHFESTEKTTDQAIINLTTGLCESILKNLDTESVLNELRTKSDKKLELWEELKILSFCRCTTFVYAISLLVASLRVQLNIIGGYLYKDTLQNTEKITKEIQTVYSLVLIQHLMGHGLNQLTKVIRENVFRVMKSHSLKEKLMLSDVEQLFWSIQHSVDKDINKNLVQFILPAEVHHNQQDEILNKMLADSMDVFECGDFLDVCESSINNAFAVVIDKVADFYVEPANGKNKLNDDESQPSPSTSRGTSENMVLNGNEHVNINKISLPLAKLIPILNGLTGQIPLSNAADSSKSSKNLASSITILQSLNQQLKTLGANVYEVYSH
| Type | Start | End | Length |
| CDS |
204072 |
204197 |
126 |
| CDS |
204294 |
205301 |
1008 |
| intron |
204198 |
204293 |
96 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001661904 |
perixosomal biogenesis factor [Aedes aegypti] gb|EAT36113.1| perixosomal biogenesis factor [Aedes aegypti] |
2e-81 |
| InterPro |
IPR006966 |
Peroxin-3 |
|
| Gene Ontology(BP) |
GO:0007031 |
peroxisome organization |
|
| Gene Ontology(CC) |
GO:0005779 |
integral to peroxisomal membrane |
|
| Pfam |
PF04882.7 |
Peroxin-3 |
2.4e-64 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS204990PA |
| P. vanderplanki |
Pv.09491 |
| A. gambiae |
AGAP002507 |
| A. mellifera |
GB19236-PA |
| P. humanus |
PHUM297990-PA |
| M. musculus |
ENSMUSG00000019809 |
| D. melanogaster |
FBgn0036484 |
| A. aegypti |
AAEL011781 |
| T. castaneum |
TC002842 |
| H. melpomene |
HMEL009499-PA |
| N. vitripennis |
NV12474-PA |
| H. sapiens |
ENSP00000356563 |
| B. mori |
BGIBMGA010225-TA |
| C. quinquefasciatus |
CPIJ013204 |