MidgeBase gene description page [Pn.07762]
Outline
| Gene ID | Pn.07762 |
| Type | Protein coding gene |
| Scaffold | PnScaf7175 |
| Start | 108588 |
| End | 109400 |
| Direction | - |
Sequence
Transcript: 444 (bp)
ATGGCTGATGCTGTTGATGAACAAGTTCGCAAGAAGCGTACCTTCAGAAAGTTTACTTATCGTGGCGTTGATTTGGATCAACTCTTGGACATGCCGAATGAACAGTTGTCAGAGCTTATGCACAGCCGTGCTCGTCGCCGCTTTGCTCGTGGTTTGAAACGCAAACCAATGGCTCTCATTCAGAAATTGAGAAAAGCCAAGAAGGAGGCACCACCACTAGAGAAGCCTGCTATTGTTAAGACACACTTGCGCGACATGATCATCGTTCCAGAAATGGTTGGATCAATTGTTGGCATCTACAACGGAAAAACATTCAATCAAGTTGAAATCAAACCAGAGATGATTGGACATTACTTGGGAGACTTCTCGCTTACGTACAAGCCAGTCAAGCACGGTCGTCCTGGTATCGGTGCCACTCACAGTTCACGATTTATTCCATTAAAG
Protein: 148 (aa)
MADAVDEQVRKKRTFRKFTYRGVDLDQLLDMPNEQLSELMHSRARRRFARGLKRKPMALIQKLRKAKKEAPPLEKPAIVKTHLRDMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGDFSLTYKPVKHGRPGIGATHSSRFIPLK
| Type | Start | End | Length |
| CDS |
108591 |
108713 |
123 |
| CDS |
109001 |
109312 |
312 |
| CDS |
109392 |
109400 |
9 |
| intron |
108714 |
109000 |
287 |
| intron |
109313 |
109391 |
79 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
CAJ17201 |
ribosomal protein S15e [Micromalthus debilis] |
7e-73 |
| InterPro |
IPR005713 |
Ribosomal protein S19A/S15e |
|
| InterPro |
IPR023575 |
Ribosomal protein S19, superfamily |
|
| InterPro |
IPR002222 |
Ribosomal protein S19/S15 |
|
| InterPro |
IPR020934 |
Ribosomal protein S19 conserved site |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0015935 |
small ribosomal subunit |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF00203.16 |
Ribosomal protein S19 |
9.8e-35 |
| Pfam |
PF02108.11 |
Flagellar assembly protein FliH |
0.006 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC001004 |
| A. aegypti |
AAEL011656 |
| D. plexippus |
DPOGS208043PA |
| C. quinquefasciatus |
CPIJ001180 |
| P. humanus |
PHUM399880-PA |
| H. sapiens |
ENSP00000466010 |
| A. mellifera |
GB10353-PA |
| M. musculus |
ENSMUSG00000063457 |
| H. sapiens |
ENSP00000467676 |
| B. mori |
BGIBMGA001471-TA |
| D. melanogaster |
FBgn0034138 |
| H. melpomene |
HMEL014605-PA |
| A. gambiae |
AGAP001274 |
| P. vanderplanki |
Pv.02435 |
| N. vitripennis |
NV13078-PA |