MidgeBase gene description page [Pn.07733]
Outline
| Gene ID | Pn.07733 |
| Type | Protein coding gene |
| Scaffold | PnScaf7137 |
| Start | 23034 |
| End | 27005 |
| Direction | - |
Sequence
Transcript: 1824 (bp)
ATGGTAATGAACACGGAGACGAAGGATTCCAAGGATTTGAGCAGAAATGGAAAAAAATCGTCCTCAAATAATTCGCCATTAACAAATTCAGAGCAGAAAAATAAACACTTTATAAGCGAGGATCTTACTCCCGAAGTATCCTCGGATGATGATAGCAACTCGAAGAAGAATCTCAACAGCAAGCCGAAAAACAAGAGCGAATTCGAAGAAAAAATTCGCGTCGGCAAAGATTATCAAGCAGTTGTGCCCGAATTTAATCCAAAGAATGATGTCGCCATCGAGAAGGCTCTATTGGTGTGGTCACCAAATTCCAAGGACATTCCTGATAGCAAAATTGAAGAGTATATCCAACTAGCAAAGGAACGATACGGCTACAATGCAGAACAGGCTTTGGGAATGCTTTATTGGCATAAGCATGATCTGGCAAAAGCAGTGATTGATTTAGCAAATTTTACACCATTTCCCGAGGAATGGTCCAAAGAAGACAAGGTTTTATTTGAACAGGCGTTTCAATTTCACGGCAAGTGTTTCCACCGAATACGGCAAATGCTTCCGGACAAATCTATTGCGAGCTTGGTGAAATTCTATTACTCATGGAAAAAGACGAGAAGTCGTACGAGTGTCATGGATCGACAAGAGAAGAGAAAAAACGAAGGTGGCTCCGAAAACGGTAGCGACGACACTCCAGACAATTCTGACGTGGAAGACAAGGACGTGAAGCGAATGACCGGTATGAACAGAATAGAAAACAAGGATACAGGCTATTCGTCTTCATCATCTTCCTCTAATGGAATTTCCAAGTTGTCATCATTGAATTGTCAAAACTGTAAAGTCTTGTGCAATGAGCTCAATCAGACAGCCGTTGGAAGTTTTTGTTCGAGCTGCTTTCAGCACTGGAGACGTACTGGTGAATTGCGGCCGGTCCAGGGACCGAACCTGCAACGTCCACGATCAAAGACGAACAAGCTGTATTACTATCAAGGATATCACGACGGATCGAGCAAATACAAGCGCAAACCACCGAAAGGAATGTACATTAATCACGACGATGTCTTAAAATTGGCCGCCCAAGACTTGAACGAGTCGATGACGCCTCGCAAGCAACCCGTTCCCCATAAATTCGATCTCTTGGCCGAAACCGATCGAGAAATCAGCGTCCTCTATAGTCAAATTCAAGCAAACAAACAGAAAATTAGTTCGGTAAAGGCAGAAAATGAGTCATTTCGCGAATGTCGTCTACCTGAAGAAGTTGCAATGAGTCGCGTTAATATTCGATGGACAAAAGACGAGTTGTCGCTCGCAATTATGGGATTTCGTAAATTTGGGCAGAATTTCAAGGCCATTTCTGAAGTCATTTCAACCAAAACCGAGTCACATGTTCGTAAATTTTTCGCAAAATATCGCAAGAGTCGCAACCTGGACACAGTGTGTCAAGAGTCGGAGGCGACCACGTCTACCGCGAATGCACAAAAGAGCAATAGTAATGATGGAATTAAGCAAGACATTGAGGTCATGGAGATTGATTCCGATGATGACAACAAAAGTGAACAACAAAACAGCAATGAGAATGCTGACGAAGTAATTAATGTCAACGGCACAAAGAGAGATGAGGAGAGTATGAAAGTTCAAAGCAAGGCAAACATAGTCGTAGTCACGACATCCACCTCGAAGCCATTGAAACGCAAAATTGAGAATGACGATGACGATTGCATTATTGAGAGTCCAGAGAAGAAGTTCGCACCACTCTTGGCCGATAAGAGTGAGATCTCAATTACGCCGATTCGCAAGCCATCGGCCGAAGACAAGCAGAATGCTACTGTTGCA
Protein: 608 (aa)
MVMNTETKDSKDLSRNGKKSSSNNSPLTNSEQKNKHFISEDLTPEVSSDDDSNSKKNLNSKPKNKSEFEEKIRVGKDYQAVVPEFNPKNDVAIEKALLVWSPNSKDIPDSKIEEYIQLAKERYGYNAEQALGMLYWHKHDLAKAVIDLANFTPFPEEWSKEDKVLFEQAFQFHGKCFHRIRQMLPDKSIASLVKFYYSWKKTRSRTSVMDRQEKRKNEGGSENGSDDTPDNSDVEDKDVKRMTGMNRIENKDTGYSSSSSSSNGISKLSSLNCQNCKVLCNELNQTAVGSFCSSCFQHWRRTGELRPVQGPNLQRPRSKTNKLYYYQGYHDGSSKYKRKPPKGMYINHDDVLKLAAQDLNESMTPRKQPVPHKFDLLAETDREISVLYSQIQANKQKISSVKAENESFRECRLPEEVAMSRVNIRWTKDELSLAIMGFRKFGQNFKAISEVISTKTESHVRKFFAKYRKSRNLDTVCQESEATTSTANAQKSNSNDGIKQDIEVMEIDSDDDNKSEQQNSNENADEVINVNGTKRDEESMKVQSKANIVVVTTSTSKPLKRKIENDDDDCIIESPEKKFAPLLADKSEISITPIRKPSAEDKQNATVA
| Type | Start | End | Length |
| CDS |
23037 |
23342 |
306 |
| CDS |
23431 |
23610 |
180 |
| CDS |
23690 |
23857 |
168 |
| CDS |
23967 |
24237 |
271 |
| CDS |
24397 |
24584 |
188 |
| CDS |
25711 |
25872 |
162 |
| CDS |
25937 |
26277 |
341 |
| CDS |
26698 |
26748 |
51 |
| CDS |
26849 |
27005 |
157 |
| intron |
23343 |
23430 |
88 |
| intron |
23611 |
23689 |
79 |
| intron |
23858 |
23966 |
109 |
| intron |
24238 |
24396 |
159 |
| intron |
24585 |
25710 |
1126 |
| intron |
25873 |
25936 |
64 |
| intron |
26278 |
26697 |
420 |
| intron |
26749 |
26848 |
100 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFA01740 |
hypothetical protein TcasGA2_TC007336 [Tribolium castaneum] |
1e-113 |
| InterPro |
IPR001005 |
SANT/Myb domain |
|
| InterPro |
IPR000949 |
ELM2 domain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| InterPro |
IPR017884 |
SANT domain |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF00249.26 |
Myb-like DNA-binding domain |
2.1e-12 |
| Pfam |
PF01448.19 |
ELM2 domain |
2e-11 |
| Pfam |
PF13921.1 |
Myb-like DNA-binding domain |
0.046 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM256790-PA |
| T. castaneum |
TC007336 |
| H. sapiens |
ENSP00000436838 |
| M. musculus |
ENSMUSG00000037395 |
| A. aegypti |
AAEL001126 |
| S. invicta |
SI2.2.0_08490 |
| H. sapiens |
ENSP00000355973 |
| H. sapiens |
ENSP00000301459 |
| D. plexippus |
DPOGS211367PA |
| H. sapiens |
ENSP00000432779 |
| A. mellifera |
GB17956-PA |
| A. gambiae |
AGAP002488 |
| H. sapiens |
ENSP00000398558 |
| C. quinquefasciatus |
CPIJ009982 |
| M. musculus |
ENSMUSG00000024968 |
| B. mori |
BGIBMGA008364-TA |
| D. melanogaster |
FBgn0261573 |
| N. vitripennis |
NV18128-PA |
| P. vanderplanki |
Pv.12017 |
| H. melpomene |
HMEL002792-PA |
| H. sapiens |
ENSP00000355972 |
| P. vanderplanki |
Pv.00194 |
| H. sapiens |
ENSP00000413929 |