MidgeBase gene description page [Pn.07720]
Outline
| Gene ID | Pn.07720 |
| Type | Protein coding gene |
| Scaffold | PnScaf7109 |
| Start | 33553 |
| End | 34797 |
| Direction | - |
Sequence
Transcript: 1173 (bp)
ATGAGGTTGCTAACAGAGCTTCTGCTGCTGACATTGATGGCCTTTATGCTGGACCACTCGTCGGCGACACTCAATCCCAATAGCAAGAAATCAAGACAGAAAAATCCACAGGAAATTAAGATGAATCAGGGACCGGTTGACAGAAGTGTCTTTGACCGAGGCCTTGTGGATGTCGAGCCTTTGGCCTCACAAATCGTCGCCGAGGCCAACACGTACTTCAAAGAGACTGCAATTAAAAATTTCAACAACACAGTTTTGGGCTACGTCACACCGTGGAACTCACACGGCTACGACGTGGCCAAGACGTTTGGCAAGTTCAACATCATTTCGCCGGTGTGGCTGCAGATTTTAAGAAAGCAAGACTTGAAGTATGAGGTCGCCGGCACGCACGACTGCGACGAGAACTGGATGAGAGATGTGAGGAAAGTTGGCGGAGCCAAAATCATTCCCAGAATTCTCTTCGATCACTTTACCGATCGAGATTTTTCGAAGCTCCTCACGTATCAGGAGGAGATAAATGTCGTGAACAAGCTGATTGTCGAGACCTGCAAAAAGTACAACTTTGACGGAATCGTTCTGGAAGTGTGGAGCCAGCTTGCGAAGAGAGTCGACGATCAGCATCTCATCAATTTGGTGCGAAGCATTGCACGGGCATTGCGGCAGGCAAAACTGAAATTCATTCTAGTCATTCCTCCGTCTCATCGCGGCCCCGATCTCTTCAACGCACAACACTTTGAGTTGCTCTGGGAGGATGTCGACCACTTTTCGCTGATGACCTACGACTTTTCATCCTACGAACGACCTGGTGCAAACTCACCGCTCTACTGGATGAAAAACGTTGTCCTTCATTTGTGCCCCGACGAGACGAAAGAGAAACGCGAGAAAATTCTCTTGGGTCTCAACTTTTATGGATACGATTTTACTCCGAACGGCGGGGAAGCCGTTCTCGGTGACACATACTTAAATCTTCTCAAATTTTACAAAGGCCGTCTGAAGCTCGACGAGAAAGACCAGGAGCACTACTTTGAAGTGAAGACTAATTCGGGAAAGCACTTGGTATTTTATCCATCACTGTACTCGATCCAAATGCGAATCGACTTGGCTAGGGAACTCAGAACCGGTCTCTCGATTTGGGAAATCGGCCAGGGCTTAGACTTTTTCTATGATTTGCTG
Protein: 391 (aa)
MRLLTELLLLTLMAFMLDHSSATLNPNSKKSRQKNPQEIKMNQGPVDRSVFDRGLVDVEPLASQIVAEANTYFKETAIKNFNNTVLGYVTPWNSHGYDVAKTFGKFNIISPVWLQILRKQDLKYEVAGTHDCDENWMRDVRKVGGAKIIPRILFDHFTDRDFSKLLTYQEEINVVNKLIVETCKKYNFDGIVLEVWSQLAKRVDDQHLINLVRSIARALRQAKLKFILVIPPSHRGPDLFNAQHFELLWEDVDHFSLMTYDFSSYERPGANSPLYWMKNVVLHLCPDETKEKREKILLGLNFYGYDFTPNGGEAVLGDTYLNLLKFYKGRLKLDEKDQEHYFEVKTNSGKHLVFYPSLYSIQMRIDLARELRTGLSIWEIGQGLDFFYDLL
| Type | Start | End | Length |
| CDS |
33556 |
34455 |
900 |
| CDS |
34525 |
34797 |
273 |
| intron |
34456 |
34524 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001869617 |
chitinase domain-containing protein 1 [Culex quinquefasciatus] gb|EDS29877.1| chitinase domain-containing protein 1 [Culex quinquefasciatus] |
1e-129 |
| InterPro |
IPR001223 |
Glycoside hydrolase, family 18, catalytic domain |
|
| InterPro |
IPR011583 |
Chitinase II |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0006032 |
chitin catabolic process |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Gene Ontology(MF) |
GO:0004568 |
chitinase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00704.23 |
Glycosyl hydrolases family 18 |
1.2e-19 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000025512 |
| S. invicta |
SI2.2.0_14120 |
| P. vanderplanki |
Pv.01947 |
| H. sapiens |
ENSP00000338838 |
| H. sapiens |
ENSP00000324821 |
| H. sapiens |
ENSP00000388156 |
| D. melanogaster |
FBgn0031996 |
| H. sapiens |
ENSP00000435503 |
| T. castaneum |
TC006344 |
| H. sapiens |
ENSP00000416034 |
| D. plexippus |
DPOGS200442PA |
| A. aegypti |
AAEL011496 |
| C. quinquefasciatus |
CPIJ019363 |
| H. sapiens |
ENSP00000391255 |
| A. aegypti |
AAEL005684 |
| B. mori |
BGIBMGA008900-TA |
| P. humanus |
PHUM376550-PA |
| H. sapiens |
ENSP00000325055 |
| N. vitripennis |
NV12326-PA |
| H. melpomene |
HMEL011599-PA |
| A. mellifera |
GB12238-PA |
| A. gambiae |
AGAP008124 |
| H. sapiens |
ENSP00000398722 |