MidgeBase gene description page [Pn.07673]
Outline
| Gene ID | Pn.07673 |
| Type | Protein coding gene |
| Scaffold | PnScaf7097 |
| Start | 682 |
| End | 2573 |
| Direction | - |
Sequence
Transcript: 1815 (bp)
ATGCTTACCACTCGTTTAAGCACGAAAAAGGATGAGAGAAAGAAACGCAAGAAGAAGAAACTCGCTGCACTAGTGAACATCATGAATATCAACGAAATGGAAAAGGATGCTCTTGAAAAAGGAATTAAAATTCAGTCAAACGATAGCTCTGATGAAAAACCACCGATCAAAAAAATTAAATTTGAAATCATTAGTGAAACCATGCAGGATAATGACTATAATTTGCTGAAGAAAAATGTAAGAAGAGCGAAAGAAACTTTCGTTCCAATGTTCCGATTGAATTCTACGGGTGAAAAATCATCGTTGAACGTAGCCATTGATCATCGACAGCCGCTCATCTTTCAAGACATTCAAAACCTACTAATGTATTCTCTTCTCAAAAGACAATCGCCAGTGAAGCCGAACCGATGGAGCTGTCTCGAAAATTCAAATAAAATCGCCCATACAATCGTTCTCGTCGTTGACGGATTTGGATTGTACGAATTTCAATCGAATGAAAGCAGCTTCGCTTGTGTCAGCAAGATCTTCGAGCACAAGTTAGAATTAATACCGGCAAGGGAAAAGATAGTCCAAGAAATACTCTTGGTTCCCTGGATGTACTCGGAAATGGAGAATATTGTTCAGAAGTTCGGTAGCTTAGAAGCGGCTTTAATGCTCAGTCGAAACCCTAACGACAATAACTTTTTCTCGATCGACTATAGTTCTAGTAAAAACAGCATGGATTGTGCGGACGTAAAGGACCAAGATAATTTTCCACGTACACAGTTGCTGCTCTCGCCGTTACAAATGATTGTTGAAGGTTATCCATTACCTCAACTGAATAATGACAAATATTCCGATTTTCGAACCACAAAAAAGCGATACAAGCCCGTCACGAAGAATTCTCCGATGTTTGGTCTCGATTGTGAAATGGTGCGCTCTCAAATGGCTAACAATGAATTGGCTCGAGTATCTATTGTTGATGAAAATTACAACAGTGTTTATGAAACTTTAGTGCGTCCATCATCTCAAGTAGTAAATTACTTGACTGAATGGTCTGGCGTTACGAAAGAAATGTTGGATGGAGCCACAAAAACGCTGAAAGACGTGCAAGATGAAGTATGTGAGCTTTTGCCTCCTGATGCAATTCTAGTAGGTCAGTCTTTGAATTGCGATTTAAAATCCATGAAACTCATGCACCCTTACTGCATTGACACGAGCATAATCTACAATTTGACTGGTGACCGACAAAGAAAATCGAAGCTTCAGTTGTTGGCAAAGGAGTTCTTGGATCAGGAAATTCAAATGAGCAAATTAGGACATTCGAGCCTCGAAGACTCCACAGCATGCTTAAAGTTGACAAAGCTAAAACTTTCGAGAAATATTTACTATGGAGACCTCGCCTTGGAGTCAAAGAGAATGAAAATTACAGAAAAGCTCCCAATACCAAATCAACAAGTGAAGGCAGCCTTTGTCACCACTCATAATTGCAAGGTTGATCTAAATCAAATTCGCAGAGACATTCTCACTCAAAAATTAGAAGAGTTTGGAATAATGCATCACAAGGAGCCATCAGTTAAAAGAGCTATCAAGAGACTCCGAGAAGCAGCGGTCGAAAACGATTTTTGTCTGTCCTACATCAACGCTTTCGAGGATGTTGTTTTGAGCGAAAACCAGGAGCAGTTGCTCAATGAGAGTGAAAAAATTGTACCGTTTATCGACAAGTGTGTCGATAAAGCTTGGGATGGAGTTGCAAAAAATGGACTTTTTGTTGTCATTTTCAATGGCCGTGACGGAAGTAATTCAAATGGAGTTGCCTTCATAAAGGTTAAAACT
Protein: 605 (aa)
MLTTRLSTKKDERKKRKKKKLAALVNIMNINEMEKDALEKGIKIQSNDSSDEKPPIKKIKFEIISETMQDNDYNLLKKNVRRAKETFVPMFRLNSTGEKSSLNVAIDHRQPLIFQDIQNLLMYSLLKRQSPVKPNRWSCLENSNKIAHTIVLVVDGFGLYEFQSNESSFACVSKIFEHKLELIPAREKIVQEILLVPWMYSEMENIVQKFGSLEAALMLSRNPNDNNFFSIDYSSSKNSMDCADVKDQDNFPRTQLLLSPLQMIVEGYPLPQLNNDKYSDFRTTKKRYKPVTKNSPMFGLDCEMVRSQMANNELARVSIVDENYNSVYETLVRPSSQVVNYLTEWSGVTKEMLDGATKTLKDVQDEVCELLPPDAILVGQSLNCDLKSMKLMHPYCIDTSIIYNLTGDRQRKSKLQLLAKEFLDQEIQMSKLGHSSLEDSTACLKLTKLKLSRNIYYGDLALESKRMKITEKLPIPNQQVKAAFVTTHNCKVDLNQIRRDILTQKLEEFGIMHHKEPSVKRAIKRLREAAVENDFCLSYINAFEDVVLSENQEQLLNESEKIVPFIDKCVDKAWDGVAKNGLFVVIFNGRDGSNSNGVAFIKVKT
| Type | Start | End | Length |
| CDS |
685 |
2349 |
1665 |
| CDS |
2424 |
2573 |
150 |
| intron |
2350 |
2423 |
74 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_648050 |
CG8368, isoform A [Drosophila melanogaster] ref|NP_729177.1| CG8368, isoform B [Drosophila melanogaster] gb|AAF50654.1| CG8368, isoform A [Drosophila melanogaster] gb|AAN12085.1| CG8368, isoform B [Drosophila melanogaster] gb|AAZ41783.1| LD29573p [Drosophila melanogaster] gb|ACL88490.1| CG8368-PA [synthetic construct] |
1e-111 |
| InterPro |
IPR006055 |
Exonuclease |
|
| InterPro |
IPR012337 |
Ribonuclease H-like domain |
|
| InterPro |
IPR013520 |
Exonuclease, RNase T/DNA polymerase III |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0004527 |
exonuclease activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF04784.9 |
Protein of unknown function, DUF547 |
0.061 |
| Pfam |
PF00929.19 |
Exonuclease |
1e-20 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000030924 |
| B. mori |
BGIBMGA011782-TA |
| C. quinquefasciatus |
CPIJ010599 |
| T. castaneum |
TC003027 |
| S. invicta |
SI2.2.0_05196 |
| H. sapiens |
ENSP00000261378 |
| P. humanus |
PHUM519520-PA |
| H. sapiens |
ENSP00000455139 |
| H. melpomene |
HMEL006638-PA |
| H. sapiens |
ENSP00000457616 |
| N. vitripennis |
NV10915-PA |
| D. plexippus |
DPOGS211635PA |
| H. sapiens |
ENSP00000261377 |
| D. melanogaster |
FBgn0035707 |
| A. gambiae |
AGAP005406 |
| P. vanderplanki |
Pv.07117 |
| A. aegypti |
AAEL006744 |
| A. mellifera |
GB12175-PA |
| P. vanderplanki |
Pv.08730 |