MidgeBase gene description page [Pn.07670]
Outline
| Gene ID | Pn.07670 |
| Type | Protein coding gene |
| Scaffold | PnScaf7095 |
| Start | 3086 |
| End | 3668 |
| Direction | + |
Sequence
Transcript: 519 (bp)
ATGAATAATTTGATAAAAAGTGCTTTCCAGCGACCATTTGCGCTTAATTTCATTTCAATACGAGGAATTACATCAACGCCCATTAATTGTCTAAAGCAGATTGAACTCGAACAAGAAAAAGATACTTTGACGGTGCGAGCAAAGATCGTCGAGTCAGGAAGGGAGTCACTTCTGCTGAAGCAAGTGAAGGAGTGCGCAAAGGATGGAGTTCGTTTCTGCCCAGAATGCACGCTTAAGTTGAATATCAAACACACGGATGTCCTTATTTTGTCCCAGTACGTTCGACCCGACGGCTGTATGCTGCCGAGACGAGTTACGGGACTGTGCAAGCGCCAGCAAAAGCGAATTGGAACATTAGTTACGATGGCTCACAAAGCCGGACTCCTGCATGGGCTCAAGCCCTCGAGCTGCAAGAAAGAGCCGGATCAGAGATATCAGCACAAAAAATTCAACACCTACTTCTTCGAGGAGACGATCAAGCTACCAAAGCCGATTTACAAGAAATGTGAAGACCCGCAA
Protein: 173 (aa)
MNNLIKSAFQRPFALNFISIRGITSTPINCLKQIELEQEKDTLTVRAKIVESGRESLLLKQVKECAKDGVRFCPECTLKLNIKHTDVLILSQYVRPDGCMLPRRVTGLCKRQQKRIGTLVTMAHKAGLLHGLKPSSCKKEPDQRYQHKKFNTYFFEETIKLPKPIYKKCEDPQ
| Type | Start | End | Length |
| CDS |
3086 |
3185 |
100 |
| CDS |
3247 |
3665 |
419 |
| intron |
3186 |
3246 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_312545 |
AGAP002407-PA [Anopheles gambiae str. PEST] gb|EAA44943.3| AGAP002407-PA [Anopheles gambiae str. PEST] |
4e-43 |
| InterPro |
IPR001648 |
Ribosomal protein S18 |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF01084.15 |
Ribosomal protein S18 |
1.5e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL008421-PA |
| N. vitripennis |
NV15738-PA |
| T. castaneum |
TC030560 |
| D. plexippus |
DPOGS207701PA |
| H. sapiens |
ENSP00000398679 |
| H. sapiens |
ENSP00000361206 |
| A. aegypti |
AAEL007355 |
| D. melanogaster |
FBgn0051450 |
| M. musculus |
ENSMUSG00000023967 |
| P. humanus |
PHUM361390-PA |
| B. mori |
BGIBMGA009934-TA |
| S. invicta |
SI2.2.0_14381 |
| A. gambiae |
AGAP002407 |
| C. quinquefasciatus |
CPIJ015929 |
| H. sapiens |
ENSP00000361188 |
| P. vanderplanki |
Pv.09533 |
| A. mellifera |
GB16303-PA |