MidgeBase gene description page [Pn.07637]
Outline
| Gene ID | Pn.07637 |
| Type | Protein coding gene |
| Scaffold | PnScaf7059 |
| Start | 3685 |
| End | 9942 |
| Direction | - |
Sequence
Transcript: 2694 (bp)
ATGCCTACGTTTTACTGCACAAAGTCGTCGCTCTTTTCGCAGTCGTGTCTGGTTTTAATTAAACTTCTCAATCTCGACATTGAGATCGAAGAGCAGGAGTTGGGGCAAGATGACATCAACCCCATTATGAAAGTGCCGGTGTTTATCGACGAGGAGCTGGTTCTTACCGAGCCACGCGCCATTATGGTTTATCTGGCGGAAACGAGCGATCTTTACTCGAGCGACAGAAAAAAGCGAGCAACAATTAATCAGCGACTGTTCTACGACTCGGCCGTCGTGTTTCCAAGCTTAATGAAGCTAATTCGACCGATGGTTCTTGAGAAAAAGAAGGAAGTTCAGACGAAGCATAAGGACGCTTTTCTGGCAGTTTTCCGAGTGCTCGAAGGTCTTTTGGTTCACACTGAATTTTTTGCCAACAACGAAATCTCACTCGCAGATGTCGCAATATTTCCGAGCATCCTCACAGCAACTCAACTCGGTCTGAACTTGTCGCAGTTTCCCTCGCTCAACGGATGTGTCGATAAGGGAGAAGACAAAATGTCATCGAAAATGACACTTTACTATCTGAGCGGATCGATGCCGAGCAGAGCCTGCATGCTTCTCGCGAAGTACCTCCAACTAGACTTCGAAATCAAGGACGTAAACATTCCGAACGGCGACCAGTTCAGCGAGGAGTTTGCGAAGCTCAATCCGCTGAAGAAAATTCCAGTTCTCGTTGATGGAGACTACGTTCTGTACGAGTCGCGCGCCATTCTCGCATACTTGGTTAACTCGCGCAGTCCCGGCAGCTCCTTGTATCCGACTGACCCCAAAAAGCGAGGAATTGTAGACCAACGACTATATTTTGACGCCACCGTTTTTCTTCCAAACATGCTCGCCGTCATCCGACCGATAGTGGTCGAGAAGAGGAACACGGTGGCTCAAGAGCTTAAGAAGCCAATCGAGGACTCGTTGGAGATGATTGAGCGGTACTTAAACGAGTACGAGTATGTGGCAGCTCCACACATGACAATTGCCGACATTTCTATCCTGCCGAGTGTCACAACTGCTCGAGAATTTGGCTTTGACTTGTCGAAATATCCGCGTTTGAGTGAATGGCATACGAAACTCGAGAGTCTACCAGACTTTGATGAGAACCTCTATGGCTCGAAAATGAACGCAGGTTTCTTGAGAAAAATGATTGGAGGACCAATTTTTAAGCAGAGTGACTTGAGAATCAATACACCGACACCCTTCAATAAAGTGAAGGTGATTCCACCCGAGGCGAAGATAAGTGTCGCGAAAATTCTGAAGACTCTTGAAGGCTATTTAAGCGAAGGCGATTATGTTGCCGGCAACGACCTGACCATCGCCGACTTTTCCATCGTGACGAACATCACGACAATTTGCCAAGCAGAGCTCGTAAAGAAAATAATAAAAATGCCATTAAAACTCTATTTCGCACCTGGAAGCATGCCGAGTCGTGCTTGTCGGCTCTTGGCAGCGTCACTGAATCTCGATATCGAGATAAAAACGGTGAATTTGGCTGCGGGCGAACAAAATACTCCCGAGTTCTTGAAACTCAATCCACTCCACCAGGTACCGGTGCTCGTCGACGACGACTTTGTGCTGTGCGAGTCGCGAGCAATTCTCGCCTATTTGGTGAACAAATTTAAGCCAGACAGTGCGCTCTACCCAAGCGATCCTCAAAAACGAGCCGTCGTCGATCAGCGTCTGTATTATGACGCCACTGTCGTCTTCGAGTCGTGCGCCGAGATAATTCGCACAGTGCTGTACGGGCGAGCGAAGAAAATTCCACAGGAGCAGCGCGAGAGAGTAGTGGAGACTCTGAACGCACTGGAAGGATTTCTCTCGCCAAATAACAAGTGGTTCGCCAACGACGCGCTCTCAATAGCCGACATCTCAATACTTCCAACGTTAACCACGGTCAAGGAGCTCGGCTACGACTTGGACAAGCACCCGAAGCTCAGCAGTTGGTACGAAAGATGCACATCGTTGCCCGGCTTCGGCGACAATGTCGAGGGCGCGCAGAATTTGGCGACAAGAATGTTCGCCGTCATGGACGACAGATTAGCGGTCTTGATGACCATAAGAAATCTCGAGATTGACGTGGAGCTCGTGTTCATAAATTTTCAAAAGGGAGAGAACACGAGCGAAGAGTTTACGAAGCTTAATCCTCTACAGCAAGTGCCGGTGTTGGTTGAGGACGACGGATTTGTACTGACAGAGTCGAGAGCGATTGCCGCTTATCTTGTTGCATCGCGAGCACCCAACAGCACTCTTTATCCTCTCGAGGACGCCGTGAAGAGGGCTTTGGTCGACGAGCGACTCTACTACGATGCAACCACTGTGTTCTTCAGCCACATTCAGATGCTGCATCCGATGGTGGCTACGGGCGACTCACACATACCCGATGCGAAAATTGAAATCATGAGAAACGTTCTGGCAACGCTGAATAATTTTCTCGGAGACAAAAAGTGGTTTGCAGGCGACGAGGTGACAATCGCCGACTTCTCGATTCTCTCGAACTTGATCGTAATAATGAGTGCCGGCATCCGCATCGACAAGCACCGAAATCTTCTGGCCTGGTACGAGAGGTGTAAGGAGTTGAAGGGCTTCGAGGAGAATTACGAAGGCGGCAAGCTGGTGTCGGGGCTGCTGAAAATGAAGAACCTTCCGCCCTTGTCATACATC
Protein: 898 (aa)
MPTFYCTKSSLFSQSCLVLIKLLNLDIEIEEQELGQDDINPIMKVPVFIDEELVLTEPRAIMVYLAETSDLYSSDRKKRATINQRLFYDSAVVFPSLMKLIRPMVLEKKKEVQTKHKDAFLAVFRVLEGLLVHTEFFANNEISLADVAIFPSILTATQLGLNLSQFPSLNGCVDKGEDKMSSKMTLYYLSGSMPSRACMLLAKYLQLDFEIKDVNIPNGDQFSEEFAKLNPLKKIPVLVDGDYVLYESRAILAYLVNSRSPGSSLYPTDPKKRGIVDQRLYFDATVFLPNMLAVIRPIVVEKRNTVAQELKKPIEDSLEMIERYLNEYEYVAAPHMTIADISILPSVTTAREFGFDLSKYPRLSEWHTKLESLPDFDENLYGSKMNAGFLRKMIGGPIFKQSDLRINTPTPFNKVKVIPPEAKISVAKILKTLEGYLSEGDYVAGNDLTIADFSIVTNITTICQAELVKKIIKMPLKLYFAPGSMPSRACRLLAASLNLDIEIKTVNLAAGEQNTPEFLKLNPLHQVPVLVDDDFVLCESRAILAYLVNKFKPDSALYPSDPQKRAVVDQRLYYDATVVFESCAEIIRTVLYGRAKKIPQEQRERVVETLNALEGFLSPNNKWFANDALSIADISILPTLTTVKELGYDLDKHPKLSSWYERCTSLPGFGDNVEGAQNLATRMFAVMDDRLAVLMTIRNLEIDVELVFINFQKGENTSEEFTKLNPLQQVPVLVEDDGFVLTESRAIAAYLVASRAPNSTLYPLEDAVKRALVDERLYYDATTVFFSHIQMLHPMVATGDSHIPDAKIEIMRNVLATLNNFLGDKKWFAGDEVTIADFSILSNLIVIMSAGIRIDKHRNLLAWYERCKELKGFEENYEGGKLVSGLLKMKNLPPLSYI
| Type | Start | End | Length |
| CDS |
3688 |
3837 |
150 |
| CDS |
3903 |
4070 |
168 |
| CDS |
4682 |
4985 |
304 |
| CDS |
5243 |
5382 |
140 |
| CDS |
5448 |
5618 |
171 |
| CDS |
5717 |
6088 |
372 |
| CDS |
7528 |
7695 |
168 |
| CDS |
7818 |
7839 |
22 |
| CDS |
7991 |
8136 |
146 |
| CDS |
8194 |
8361 |
168 |
| CDS |
8591 |
8888 |
298 |
| CDS |
8939 |
9010 |
72 |
| CDS |
9310 |
9353 |
44 |
| CDS |
9411 |
9578 |
168 |
| CDS |
9640 |
9942 |
303 |
| intron |
3838 |
3902 |
65 |
| intron |
4071 |
4681 |
611 |
| intron |
4986 |
5242 |
257 |
| intron |
5383 |
5447 |
65 |
| intron |
5619 |
5716 |
98 |
| intron |
6089 |
7527 |
1439 |
| intron |
7696 |
7817 |
122 |
| intron |
7840 |
7990 |
151 |
| intron |
8137 |
8193 |
57 |
| intron |
8362 |
8590 |
229 |
| intron |
8889 |
8938 |
50 |
| intron |
9011 |
9309 |
299 |
| intron |
9354 |
9410 |
57 |
| intron |
9579 |
9639 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001953796 |
GF17942 [Drosophila ananassae] gb|EDV42357.1| GF17942 [Drosophila ananassae] |
8e-66 |
| InterPro |
IPR004046 |
Glutathione S-transferase, C-terminal |
|
| InterPro |
IPR010987 |
Glutathione S-transferase, C-terminal-like |
|
| InterPro |
IPR017933 |
Glutathione S-transferase/chloride channel, C-terminal |
|
| InterPro |
IPR004045 |
Glutathione S-transferase, N-terminal |
|
| InterPro |
IPR012336 |
Thioredoxin-like fold |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13409.1 |
Glutathione S-transferase, N-terminal domain |
2e-40 |
| Pfam |
PF13410.1 |
Glutathione S-transferase, C-terminal domain |
2.6e-30 |
| Pfam |
PF02798.15 |
Glutathione S-transferase, N-terminal domain |
5.8e-60 |
| Pfam |
PF13417.1 |
Glutathione S-transferase, N-terminal domain |
1.8e-49 |
| Pfam |
PF08159.7 |
NUC153 domain |
0.17 |
| Pfam |
PF10568.4 |
Outer mitochondrial membrane transport complex protein |
0.011 |
| Pfam |
PF00043.20 |
Glutathione S-transferase, C-terminal domain |
5.2e-51 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC003346 |
| P. vanderplanki |
Pv.13707 |
| P. vanderplanki |
Pv.05575 |